fix_celltype_names2: Fix celltype names
In NathanSkene/MAGMA_Celltyping: Find Causal Cell-Types Underlying Complex Trait Genetics
View source: R/fix_celltype_names2.R
fix_celltype_names2 R Documentation
Fix celltype names
Description
Make sure celltypes don't contain characters that could interfere with
downstream analyses. For example, the R package
MAGMA.Celltyping
cannot have spaces in celltype names because spaces are used as a delimiter
in later steps.
Usage
fix_celltype_names2(
celltypes,
replace_chars = "[-]|[.]|[ ]|[//]|[\\/]",
make_unique = TRUE
)
Arguments
celltypes
Character vector of celltype names.
replace_chars
Regex string of characters to replace
with "_" when renaming columns.
make_unique
Make all entries unique.
Value
Fixed celltype names.
NathanSkene/MAGMA_Celltyping documentation built on Aug. 21, 2023, 8:55 a.m.
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View source: R/fix_celltype_names2.R
| fix_celltype_names2 | R Documentation |
Fix celltype names
Description
Make sure celltypes don't contain characters that could interfere with downstream analyses. For example, the R package MAGMA.Celltyping cannot have spaces in celltype names because spaces are used as a delimiter in later steps.
Usage
fix_celltype_names2(
celltypes,
replace_chars = "[-]|[.]|[ ]|[//]|[\\/]",
make_unique = TRUE
)
Arguments
celltypes |
Character vector of celltype names. |
replace_chars |
Regex string of characters to replace with "_" when renaming columns. |
make_unique |
Make all entries unique. |
Value
Fixed celltype names.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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