copy_snps_to_genes_files: Copy MAGMA gene mapping files to new folder

In NathanSkene/MAGMA_Celltyping: Find Causal Cell-Types Underlying Complex Trait Genetics

Copy MAGMA gene mapping files to new folder

Description

Copy SNPs-to-genes mapping files (.genes.out) produced by map_snps_to_genes to a new folder. Importantly, this function maintains the file naming and folder structure conventions necessary to run other downstream MAGMA.Celltyping functions.

Usage

copy_snps_to_genes_files(
  gene_files,
  save_dir = "MAGMA_Files",
  overwrite = FALSE
)

Arguments

gene_files	Full paths to gene mapping mapping files.
save_dir	Where to save the gene mapping files to.
overwrite	Whether to overwrite gene mapping files that already exist in save_dir (Default: FALSE).

Value

Named character list

NathanSkene/MAGMA_Celltyping documentation built on March 5, 2025, 5:44 a.m.