mergeBAMS: merge some bamfiles

Description Usage Arguments

View source: R/mergeBAMS.R

Description

merge some bamfiles

Usage

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mergeBAMS(sampleName, inFiles = NULL, bamDir = NULL, projName,
  remRoot = "/scratch/pschofield/Projects", bamExt = "*.bam",
  outDir = "Data/alignments/merge", noSub = F, ncores = 16)

Arguments

sampleName

stub of the sample name

bamDir

the directory where the files are

outDir

where to put the merged files


PietaSchofield/plibb documentation built on Nov. 11, 2018, 5:15 a.m.