PietaSchofield/plibb
Pieta Schofield's repository of former useful R functions

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runFastQC: Submit a list of files associated with a project for QC...

runFastQC: Submit a list of files associated with a project for QC...
In PietaSchofield/plibb: Pieta Schofield's repository of former useful R functions

Description Usage Arguments

View source: R/runFastQC.R

Description

Submit a list of files associated with a project for QC checking with fastQC file

Usage

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runFastQC(projName, outRoot = file.path("/scratch/pschofield/Projects",
  projName), fileList = NULL, outName = "Analysis/fastqc",
  fileFormat = "fastq", noSub = F, scpIt = T,
  fileExt = ".fastq.gz")

Arguments

projName

project name

outRoot

output root directory

fileList

list of fastq file


PietaSchofield/plibb documentation built on May 6, 2019, 6:45 p.m.

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