runMACS2: submit a MACS2 job on the the cluster

In PietaSchofield/plibb: Pieta Schofield's repository of former useful R functions

Description

submit a MACS2 job on the the cluster

Usage

runMACS2(trBam, ctBam, outDir, name, broad = T, pe = F, projName,
  genome = "hs", bcutoff = 0.01, pyMod = "apps/python",
  pyLib = "libs/python2sitepkgs", noMod = F,
  remRoot = file.path("/scratch/pschofield/Projects", projName))

Arguments

trBam	treatment bam file
ctBam	control bam file
outDir	output directory
name	output name
broad	call broad peaks

PietaSchofield/plibb documentation built on May 6, 2019, 6:45 p.m.