runMACS2: submit a MACS2 job on the the cluster

Description Usage Arguments

View source: R/runMACS2.R

Description

submit a MACS2 job on the the cluster

Usage

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runMACS2(trBam, ctBam, outDir, name, broad = T, pe = F, projName,
  genome = "hs", bcutoff = 0.01, pyMod = "apps/python",
  pyLib = "libs/python2sitepkgs", noMod = F,
  remRoot = file.path("/scratch/pschofield/Projects", projName))

Arguments

trBam

treatment bam file

ctBam

control bam file

outDir

output directory

name

output name

broad

call broad peaks


PietaSchofield/plibb documentation built on Nov. 11, 2018, 5:15 a.m.