runQualimap: QC check using Qualimap
In PietaSchofield/plibb: Pieta Schofield's repository of former useful R functions
Description
QC check using Qualimap
Usage
1
2
3
4
5
runQualimap(sampleID, projName, bamDir,
bamExt = "_dedup_realn_recal.bam", outDir = "Analysis/qualimap",
remRoot = "/scratch/pschofield/Projects", noSub = F, ncores = 1,
scpIt = T, mem = "32Gb",
qualimapMod = "apps/qualimap/2.2/linux-x86_64")
Arguments
fileList
the bam files
PietaSchofield/plibb documentation built on May 6, 2019, 6:45 p.m.
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Description
QC check using Qualimap
Usage
1 2 3 4 5 | runQualimap(sampleID, projName, bamDir,
bamExt = "_dedup_realn_recal.bam", outDir = "Analysis/qualimap",
remRoot = "/scratch/pschofield/Projects", noSub = F, ncores = 1,
scpIt = T, mem = "32Gb",
qualimapMod = "apps/qualimap/2.2/linux-x86_64")
|
Arguments
fileList |
the bam files |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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