runQualimap: QC check using Qualimap

Description Usage Arguments

View source: R/runQualimap.R

Description

QC check using Qualimap

Usage

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runQualimap(sampleID, projName, bamDir,
  bamExt = "_dedup_realn_recal.bam", outDir = "Analysis/qualimap",
  remRoot = "/scratch/pschofield/Projects", noSub = F, ncores = 1,
  scpIt = T, mem = "32Gb",
  qualimapMod = "apps/qualimap/2.2/linux-x86_64")

Arguments

fileList

the bam files


PietaSchofield/plibb documentation built on Nov. 11, 2018, 5:15 a.m.