runRScript: generate and submit a batch job that runs an Rjob

Description Usage Arguments

View source: R/runRScript.R

Description

generate and submit a batch job that runs an Rjob

Usage

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runRScript(rscript, args = NULL, jname, jproj, jdesc,
  remRoot = "/scratch/pschofield/Projects",
  locRoot = "/Users/pschofield/Projects", ncores = 1, nproc = 8,
  mem = "16Gb", wtime = "30:00:00", overwrite = T, eviron = F,
  rMod = "apps/R/3.3.0/gcc-4.8.5")

Arguments

args

any additional arguments

jname

job name

jproj

project name

jdesc

job description

rMod

which version of R to run

sname

name of the script file

logdir

log directory

locroot

local root

remroot

remote root


PietaSchofield/plibb documentation built on Nov. 11, 2018, 5:15 a.m.