runRScript: generate and submit a batch job that runs an Rjob

In PietaSchofield/plibb: Pieta Schofield's repository of former useful R functions

Description

generate and submit a batch job that runs an Rjob

Usage

runRScript(rscript, args = NULL, jname, jproj, jdesc,
  remRoot = "/scratch/pschofield/Projects",
  locRoot = "/Users/pschofield/Projects", ncores = 1, nproc = 8,
  mem = "16Gb", wtime = "30:00:00", overwrite = T, eviron = F,
  rMod = "apps/R/3.3.0/gcc-4.8.5")

Arguments

args	any additional arguments
jname	job name
jproj	project name
jdesc	job description
rMod	which version of R to run
sname	name of the script file
logdir	log directory
locroot	local root
remroot	remote root

PietaSchofield/plibb documentation built on May 6, 2019, 6:45 p.m.