runSICER: run SICER on a set of file pairs

Description Usage Arguments

View source: R/runSICER.R

Description

run SICER on a set of file pairs

Usage

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runSICER(projName, filePairs, bedDir, noControl = F,
  pyMod = "apps/python", pyLib = "libs/python2sitepkgs",
  sicerPath = "/scratch/pschofield/local/SICER",
  outRoot = "/scratch/pschofield/Projects", outPath = "",
  winsize = 500, gapsize = 4000, genome = "GRCh37", esize = "1E2",
  insize = 300, gencov = 0.8)

Arguments

projName

name of the project

filePairs

list of file pairs


PietaSchofield/plibb documentation built on Nov. 11, 2018, 5:15 a.m.