runSICER: run SICER on a set of file pairs
In PietaSchofield/plibb: Pieta Schofield's repository of former useful R functions
Description
run SICER on a set of file pairs
Usage
1
2
3
4
5
6
runSICER(projName, filePairs, bedDir, noControl = F,
pyMod = "apps/python", pyLib = "libs/python2sitepkgs",
sicerPath = "/scratch/pschofield/local/SICER",
outRoot = "/scratch/pschofield/Projects", outPath = "",
winsize = 500, gapsize = 4000, genome = "GRCh37", esize = "1E2",
insize = 300, gencov = 0.8)
Arguments
projName
name of the project
filePairs
list of file pairs
PietaSchofield/plibb documentation built on May 6, 2019, 6:45 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
run SICER on a set of file pairs
Usage
1 2 3 4 5 6 | runSICER(projName, filePairs, bedDir, noControl = F,
pyMod = "apps/python", pyLib = "libs/python2sitepkgs",
sicerPath = "/scratch/pschofield/local/SICER",
outRoot = "/scratch/pschofield/Projects", outPath = "",
winsize = 500, gapsize = 4000, genome = "GRCh37", esize = "1E2",
insize = 300, gencov = 0.8)
|
Arguments
projName |
name of the project |
filePairs |
list of file pairs |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.