runScript: generate and submit a batch job

Description Usage Arguments

View source: R/runScript.R

Description

generate and submit a batch job

Usage

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runScript(jname, jproj, jdesc, jscrp, db = 0,
  locroot = file.path(Sys.getenv("HOME")), logdir = NULL,
  scrpdir = NULL, remscrpdir, nnodes = 1, nproc = 8, mem = "8Gb",
  wtime = "24:00:00", xoverwrite = T, eviron = F, host = "feenix",
  jobDep = NULL)

Arguments

jname

job name

jproj

project name

jdesc

job description

jscrp

job script

locroot

local root

logdir

log directory

scrpdir

scripts directory

nnodes

number of nodes requested

nproc

number of processor requested

mem

memory size requested

wtime

wall time requested

remroot

remote root

overwrite

overwrite existing script file if it exists

environ

take environment variables of submitting process (not relevant for remote jobs)


PietaSchofield/plibb documentation built on Nov. 11, 2018, 5:15 a.m.