ssBAMtoBWs: create strand specific bigwigs from a standed bamfile

Description Usage Arguments

View source: R/ssBAMtoBWs.R

Description

create strand specific bigwigs from a standed bamfile

Usage

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ssBAMtoBWs(inFile, outDir, projName,
  outRoot = file.path("/scratch/pschofield/Projects", projName),
  ucscMod = "apps/ucscsuite/20150630/linux-x86_64",
  samtoolsMod = "apps/samtools/1.3.1/gcc-4.4.7",
  bedtoolsMod = "apps/bedtools/2.25.0/gcc-4.4.7")

Arguments

inFile

input bam file

outDir

output directory

projName

name of the project


PietaSchofield/plibb documentation built on Nov. 11, 2018, 5:15 a.m.