ssBAMtoBWs: create strand specific bigwigs from a standed bamfile
In PietaSchofield/plibb: Pieta Schofield's repository of former useful R functions
Description
create strand specific bigwigs from a standed bamfile
Usage
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ssBAMtoBWs(inFile, outDir, projName,
outRoot = file.path("/scratch/pschofield/Projects", projName),
ucscMod = "apps/ucscsuite/20150630/linux-x86_64",
samtoolsMod = "apps/samtools/1.3.1/gcc-4.4.7",
bedtoolsMod = "apps/bedtools/2.25.0/gcc-4.4.7")
Arguments
inFile
input bam file
outDir
output directory
projName
name of the project
PietaSchofield/plibb documentation built on May 6, 2019, 6:45 p.m.
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Description
create strand specific bigwigs from a standed bamfile
Usage
1 2 3 4 5 | ssBAMtoBWs(inFile, outDir, projName,
outRoot = file.path("/scratch/pschofield/Projects", projName),
ucscMod = "apps/ucscsuite/20150630/linux-x86_64",
samtoolsMod = "apps/samtools/1.3.1/gcc-4.4.7",
bedtoolsMod = "apps/bedtools/2.25.0/gcc-4.4.7")
|
Arguments
inFile |
input bam file |
outDir |
output directory |
projName |
name of the project |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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