subJob: Submit a job to the cluster

In PietaSchofield/plibb: Pieta Schofield's repository of former useful R functions

Description

This functions submits a job in the form of a scriptfile to the cluster via ssh

Usage

subJob(scriptfile, locRoot = Sys.getenv("HOME"), remRoot = "~",
  qsubString = "qsub", args = NULL, pname = NULL, host = "feenix")

Arguments

args	any arguments to add to the job submission string
host	a string with the name of the login host for the cluster
batchFile	a string representing the name of the script file to be submitted
user	a string with the user name of the person making the ssh connection
qsubstring	the submission string for the torque system
noSub	unless set to false will merely display the command rather than submit it.
scpIt	copy to remote using scp before submit when not using FUSE

PietaSchofield/plibb documentation built on May 6, 2019, 6:45 p.m.