subJob: Submit a job to the cluster

Description Usage Arguments

View source: R/subJob.R

Description

This functions submits a job in the form of a scriptfile to the cluster via ssh

Usage

1
2
subJob(scriptfile, locRoot = Sys.getenv("HOME"), remRoot = "~",
  qsubString = "qsub", args = NULL, pname = NULL, host = "feenix")

Arguments

args

any arguments to add to the job submission string

host

a string with the name of the login host for the cluster

batchFile

a string representing the name of the script file to be submitted

user

a string with the user name of the person making the ssh connection

qsubstring

the submission string for the torque system

noSub

unless set to false will merely display the command rather than submit it.

scpIt

copy to remote using scp before submit when not using FUSE


PietaSchofield/plibb documentation built on Nov. 11, 2018, 5:15 a.m.