sumCNValignStats: Summarise the mapping statistics information for a specific...

Description Usage Arguments

View source: R/sumCNValignStats.R

Description

Summarise the mapping statistics information for a specific dataset

Usage

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sumCNValignStats(projName,
  remRoot = file.path("/scratch/pschofield/Projects", projName),
  mapStatDir = "Analysis/mapping_stats", miSeq = TRUE,
  locDir = file.path("/Users/pschofield/Projects", projName, "Data"),
  asFilePat = "_align.stats", fsFilePat = "_insertSize.txt")

Arguments

projName

project name

bamDir

bam alignment stats directory

outDir

output directory


PietaSchofield/plibb documentation built on Nov. 11, 2018, 5:15 a.m.