sumCNValignStats: Summarise the mapping statistics information for a specific...
In PietaSchofield/plibb: Pieta Schofield's repository of former useful R functions
View source: R/sumCNValignStats.R
Description
Summarise the mapping statistics information for a specific dataset
Usage
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sumCNValignStats(projName,
remRoot = file.path("/scratch/pschofield/Projects", projName),
mapStatDir = "Analysis/mapping_stats", miSeq = TRUE,
locDir = file.path("/Users/pschofield/Projects", projName, "Data"),
asFilePat = "_align.stats", fsFilePat = "_insertSize.txt")
Arguments
projName
project name
bamDir
bam alignment stats directory
outDir
output directory
PietaSchofield/plibb documentation built on May 6, 2019, 6:45 p.m.
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View source: R/sumCNValignStats.R
Description
Summarise the mapping statistics information for a specific dataset
Usage
1 2 3 4 5 | sumCNValignStats(projName,
remRoot = file.path("/scratch/pschofield/Projects", projName),
mapStatDir = "Analysis/mapping_stats", miSeq = TRUE,
locDir = file.path("/Users/pschofield/Projects", projName, "Data"),
asFilePat = "_align.stats", fsFilePat = "_insertSize.txt")
|
Arguments
projName |
project name |
bamDir |
bam alignment stats directory |
outDir |
output directory |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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