CORCES2020_get_hichip_fithichip_overlap: Get overlap between data table of SNPs and HiChIP_FitHiChIP...

In RajLabMSSM/echoannot: echoverse module: Annotate fine-mapping results

Get overlap between data table of SNPs and HiChIP_FitHiChIP coaccessibility anchors

Description

Anchors are the genomic regions that have evidence of being functionally connected to one another (coaccessible), e.g. enhancer-promoter interactions.

Usage

CORCES2020_get_hichip_fithichip_overlap(query_dat, verbose = TRUE)

Arguments

query_dat	Fine-mapping results.
verbose	Print messages.

Source

https://doi.org/10.1038/s41588-020-00721-x

See Also

Other CORCES2020: CORCES2020_get_ATAC_peak_overlap(), CORCES2020_prepare_bulkATAC_peak_overlap(), CORCES2020_prepare_scATAC_peak_overlap(), get_CORCES2020_bulkATACseq_peaks(), get_CORCES2020_cicero_coaccessibility(), get_CORCES2020_hichip_fithichip_loop_calls(), get_CORCES2020_scATACseq_celltype_peaks(), get_CORCES2020_scATACseq_peaks()

RajLabMSSM/echoannot documentation built on Oct. 26, 2023, 2:41 p.m.