import_bigwig_filtered: Import filtered bigwig

View source: R/import_bigwig_filtered.R

import_bigwig_filteredR Documentation

Import filtered bigwig

Description

Import a subset of a bigwig file based on the coordinates in a GRanges object (gr.query_dat).

Usage

import_bigwig_filtered(bw.file, gr.query_dat, full_data = TRUE)

Arguments

bw.file

Path to a bigwig file.

gr.query_dat

GRanges object to query the bigwig file with.

full_data

Whether to return the actual read ranges (full_data=TRUE), or just the "score" column which summarizes the height of the aggregated reads across the genome (full_data=TRUE).

Value

GRanges


RajLabMSSM/echoannot documentation built on Oct. 26, 2023, 2:41 p.m.