get_NOTT2019_superenhancer_interactome: Brain cell type-specific interactomes with superenhancers

In RajLabMSSM/echoannot: echoverse module: Annotate fine-mapping results

Brain cell type-specific interactomes with superenhancers

Description

Originally from Nott et al. (2019). Specifically: aay0793-Nott-Table-S6.xlsx.

Usage

get_NOTT2019_superenhancer_interactome()

Source

https://doi.org/10.1126/science.aay0793

See Also

Other NOTT2019: NOTT2019_bigwig_metadata, NOTT2019_epigenomic_histograms(), NOTT2019_get_epigenomic_peaks(), NOTT2019_get_interactions(), NOTT2019_get_interactome(), NOTT2019_get_promoter_celltypes(), NOTT2019_get_promoter_interactome_data(), NOTT2019_get_regulatory_regions(), NOTT2019_plac_seq_plot(), NOTT2019_superenhancers(), get_NOTT2019_interactome()

Examples

## Not run: 
NOTT2019_superenhancer_interactome <- data.table::data.table(
    readxl::read_excel(
        file.path(
            "~/Desktop/Fine_Mapping/echolocatoR",
            "annotations/NOTT2019/aay0793-Nott-Table-S6.xlsx"
        ),
        skip = 2
    )
)

#### piggyback ####
tmp <- file.path(tempdir(), "NOTT2019_superenhancer_interactome.tsv.gz")
data.table::fwrite(NOTT2019_superenhancer_interactome, tmp, sep = "\t")
piggyback::pb_upload(
    file = tmp,
    repo = "RajLabMSSM/echoannot"
)

## End(Not run)

RajLabMSSM/echoannot documentation built on Oct. 26, 2023, 2:41 p.m.