convert_plots: Convert plots to various formats

In RajLabMSSM/echoannot: echoverse module: Annotate fine-mapping results

Convert plots to various formats

Description

Takes a plot or just of plots and converts to various formats.

Usage

convert_plots(
  plot_list,
  return_as = c("ggplot", "ggbio", "patchwork", "Tracks", NULL),
  x_limits = NULL,
  tag_levels = letters,
  params_list = NULL,
  verbose = TRUE
)

Arguments

plot_list	A plot, or a list of plots belonging to one of the following classes: ggplot ggbio tracks
return_as	Plot class to convert plot_list to: "ggplot"ggplot "ggbio"ggbio "patchwork"patchwork "Tracks"tracks NULLReturn original object.
x_limits	x-axis limits to be applied to all plots (useful when trying to keep a common coordinate system).
tag_levels	A character vector defining the enumeration format to use at each level. Possible values are 'a' for lowercase letters, 'A' for uppercase letters, '1' for numbers, 'i' for lowercase Roman numerals, and 'I' for uppercase Roman numerals. It can also be a list containing character vectors defining arbitrary tag sequences. If any element in the list is a scalar and one of 'a', 'A', '1', ⁠'i⁠, or 'I', this level will be expanded to the expected sequence.
params_list	A list of parameters to pass to tracks.
verbose	Print messages.

Examples

#### Create example plot_list ####
gg <- ggplot2::ggplot(mtcars, ggplot2::aes(mpg, cyl)) + ggplot2::geom_point()
plot_list <- lapply(1:3, function(x) gg)

##### As ggplot #####
return_out1 <- convert_plots(plot_list = plot_list, return_as = "ggplot")
##### As ggbio #####
return_out2 <- convert_plots(plot_list = plot_list, return_as = "ggbio")
##### As patchwork #####
return_out3 <- convert_plots(plot_list = plot_list, return_as = "patchwork")
##### As Tracks #####
return_out4 <- convert_plots(plot_list = plot_list, return_as = "Tracks")
##### From Tracks #####
return_out5 <- echoannot::convert_plots(plot_list = return_out4)

RajLabMSSM/echoannot documentation built on Oct. 26, 2023, 2:41 p.m.