merge_celltype_specific_epigenomics: Merge all cell-type-specific epigenomics

In RajLabMSSM/echoannot: echoverse module: Annotate fine-mapping results

Merge all cell-type-specific epigenomics

Description

Merges multiple cell-type-specific epigenomic datasets (Nott 2019, Corces 2020) into a single GRanges object.

Usage

merge_celltype_specific_epigenomics(
  keep_extra_cols = FALSE,
  save_path = file.path(tools::R_user_dir(package = "echoannot", which = "cache"),
    "merge_celltype_specific_epigenomics.rds"),
  force_new = FALSE,
  verbose = TRUE
)

Arguments

keep_extra_cols	Keep extra columns that are not shared across all annotations.
save_path	Path to save merged results to.
force_new	If cached merged results already exist, ignore them and recreate the file anyway.
verbose	Print messages.

Examples

gr.merged <- echoannot::merge_celltype_specific_epigenomics()

RajLabMSSM/echoannot documentation built on Oct. 26, 2023, 2:41 p.m.