annotate_snps: Annotate merged fine-mapping results from all loci

In RajLabMSSM/echoannot: echoverse module: Annotate fine-mapping results

Annotate merged fine-mapping results from all loci

Description

Annotate fine-mapping results from echolocatoR across all loci.

Usage

annotate_snps(
  dat,
  SNP_col = "SNP",
  haploreg_annotation = TRUE,
  regulomeDB_annotation = TRUE,
  biomart_annotation = TRUE,
  verbose = TRUE
)

Arguments

dat	Table containing at least a SNP column.
SNP_col	Name of the column in dat that contain's each SNPs RSID.
haploreg_annotation	Annotate SNPs with HaploReg (using HaploR).
regulomeDB_annotation	Annotate SNPs with regulomeDB (using HaploR).
biomart_annotation	Annotate SNPs with biomart.
verbose	Print messages.

Examples

dat <- echodata::BST1[Consensus_SNP==TRUE,]
dat_annot <- annotate_snps(dat = dat)

RajLabMSSM/echoannot documentation built on Oct. 26, 2023, 2:41 p.m.