biomart_snp_info: Download SNP-wise annotations from Biomart

In RajLabMSSM/echoannot: echoverse module: Annotate fine-mapping results

Download SNP-wise annotations from Biomart

Description

Download SNP-wise annotations from Biomart

Usage

biomart_snp_info(
  snp_list,
  reference_genome = "grch37",
  attributes = c("refsnp_id", "allele", "chr_name", "chrom_start", "chrom_end",
    "chrom_strand", "ensembl_gene_stable_id", "consequence_type_tv",
    "polyphen_prediction", "polyphen_score", "sift_prediction", "sift_score",
    "reg_consequence_types", "validated"),
  verbose = TRUE
)

Source

biomaRt

See Also

Other annotate: annotate_missense(), biomart_snps_to_geneInfo(), haplor_epigenetics_enrichment(), haplor_epigenetics_summary(), haplor_haploreg(), haplor_regulomedb(), plot_missense(), snps_by_mutation_type()

RajLabMSSM/echoannot documentation built on Oct. 26, 2023, 2:41 p.m.