cell_type_specificity: Get cell-type-specifity score for each cell type
In RajLabMSSM/echoannot: echoverse module: Annotate fine-mapping results
View source: R/cell_type_specificity.R
cell_type_specificity R Documentation
Get cell-type-specifity score for each cell type
Description
Aggregate SNP overlap across various epigenomic datasets
and then identify the number of SNPs overlapping by each cell type
Usage
cell_type_specificity(
plot_dat,
merged_DT,
plot_specificity = TRUE,
min_count = NULL,
top_celltype_only = FALSE,
label_yaxis = TRUE,
y_lab = NULL,
show_genes = FALSE,
x_strip_angle = 40,
show_plot = TRUE
)
Arguments
plot_specificity
Plot cell-type specificity scores
for locus instead of raw assay overlap counts.
RajLabMSSM/echoannot documentation built on Oct. 26, 2023, 2:41 p.m.
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View source: R/cell_type_specificity.R
| cell_type_specificity | R Documentation |
Get cell-type-specifity score for each cell type
Description
Aggregate SNP overlap across various epigenomic datasets and then identify the number of SNPs overlapping by each cell type
Usage
cell_type_specificity(
plot_dat,
merged_DT,
plot_specificity = TRUE,
min_count = NULL,
top_celltype_only = FALSE,
label_yaxis = TRUE,
y_lab = NULL,
show_genes = FALSE,
x_strip_angle = 40,
show_plot = TRUE
)
Arguments
plot_specificity |
Plot cell-type specificity scores for locus instead of raw assay overlap counts. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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