MOTIFBREAKR_summarize: Summarize 'motifbreakR' + 'echolocatoR' results

In RajLabMSSM/echoannot: echoverse module: Annotate fine-mapping results

Summarize motifbreakR + echolocatoR results

Description

Summarize motifbreakR + echolocatoR results after they have been merged together with MOTIFBREAKR_filter.

Usage

MOTIFBREAKR_summarize(mb_merge)

Arguments

mb_merge

Output of MOTIFBREAKR_filter.

Value

Per-locus summary in data.frame format.

See Also

Other motifbreakR: MOTIFBREAKR_filter_by_metadata(), MOTIFBREAKR()

Examples

merged_DT <- echodata::get_Nalls2019_merged()
mb_res <- MOTIFBREAKR(rsid_list = c("rs11175620"),
                      # limit the number of datasets tests 
                      # for demonstration purposes only
                      pwmList_max = 4,
                      calculate_pvals = FALSE)
mb_merge <- MOTIFBREAKR_filter(mb_res = mb_res,
                               merged_DT = merged_DT,
                               pvalue_threshold = NULL)
summary_ls <- MOTIFBREAKR_summarize(mb_merge = mb_merge)                         

RajLabMSSM/echoannot documentation built on Oct. 26, 2023, 2:41 p.m.