haplor_epigenetics_enrichment: Test for enrichment of 'HaploR' annotations
In RajLabMSSM/echoannot: echoverse module: Annotate fine-mapping results
View source: R/haplor_epigenetic_enrichment.R
haplor_epigenetics_enrichment R Documentation
Test for enrichment of HaploR annotations
Description
Test for enrichment of HaploR annotations
Usage
haplor_epigenetics_enrichment(
snp_list1,
snp_list2,
chisq = TRUE,
fisher = TRUE,
epigenetic_variables = c("Promoter_histone_marks", "Enhancer_histone_marks"),
tissue_list = c("BRN", "BLD")
)
Source
See Also
Other annotate:
annotate_missense(),
biomart_snp_info(),
biomart_snps_to_geneInfo(),
haplor_epigenetics_summary(),
haplor_haploreg(),
haplor_regulomedb(),
plot_missense(),
snps_by_mutation_type()
RajLabMSSM/echoannot documentation built on Oct. 26, 2023, 2:41 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/haplor_epigenetic_enrichment.R
| haplor_epigenetics_enrichment | R Documentation |
Test for enrichment of HaploR annotations
Description
Test for enrichment of HaploR annotations
Usage
haplor_epigenetics_enrichment(
snp_list1,
snp_list2,
chisq = TRUE,
fisher = TRUE,
epigenetic_variables = c("Promoter_histone_marks", "Enhancer_histone_marks"),
tissue_list = c("BRN", "BLD")
)
Source
See Also
Other annotate:
annotate_missense(),
biomart_snp_info(),
biomart_snps_to_geneInfo(),
haplor_epigenetics_summary(),
haplor_haploreg(),
haplor_regulomedb(),
plot_missense(),
snps_by_mutation_type()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.