annotate_missense: Annotate any missense variants

In RajLabMSSM/echoannot: echoverse module: Annotate fine-mapping results

Annotate any missense variants

Description

Annotate any missense variants with getBM.

Usage

annotate_missense(merged_DT, snp_filter = "Support>0")

Arguments

merged_DT	Merged fine-mapping results data from finemap_loci.
snp_filter	Row-wise filter to apply to merged_DT filter (provided as a string).

See Also

Other annotate: biomart_snp_info(), biomart_snps_to_geneInfo(), haplor_epigenetics_enrichment(), haplor_epigenetics_summary(), haplor_haploreg(), haplor_regulomedb(), plot_missense(), snps_by_mutation_type()

Examples

## Not run: 
merged_DT <- echodata::get_Nalls2019_merged()
annotated_DT <- annotate_missense(merged_DT = merged_DT)

## End(Not run)

RajLabMSSM/echoannot documentation built on Oct. 26, 2023, 2:41 p.m.