filter_chromatin_states: Filter chromatin states

In RajLabMSSM/echoannot: echoverse module: Annotate fine-mapping results

Filter chromatin states

Description

Annotate and filter a GRangesList using descriptions of chromatin states from ROADMAP metadata.

Usage

filter_chromatin_states(
  grl,
  chrom_states = NULL,
  chrom_states_col = "name",
  verbose = TRUE
)

Arguments

grl	A GRangesList.
chrom_states	Chromatin states to keep. If NULL (default), data will not be filtered at all (only annotated).
chrom_states_col	Column name in which chromatin state info is stored.
verbose	Print messages.

Value

Annotated/filtered GRangesList.

RajLabMSSM/echoannot documentation built on Oct. 26, 2023, 2:41 p.m.