assign_lead_SNP: Assign lead SNP
In RajLabMSSM/echodata: echoverse module: Fine-mapping data access and formatting
assign_lead_snp R Documentation
Assign lead SNP
Description
Assign lead SNP by creating a new boolean column "leadSNP"
indicating whether a SNP has the smallest p-value ("P).
If multiple rows have the same p-value,
the one with the largest effective size ("Effect") is used as the lead SNP.
Usage
assign_lead_snp(dat, grouping_vars = "Locus", verbose = TRUE)
Arguments
dat
Fine-mapping data.table.
grouping_vars
Column names to group by.
verbose
Print messages.
Value
Modified data.table.
Examples
dat <- echodata::assign_lead_snp(dat = echodata::BST1)
RajLabMSSM/echodata documentation built on Nov. 21, 2023, 8 a.m.
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| assign_lead_snp | R Documentation |
Assign lead SNP
Description
Assign lead SNP by creating a new boolean column "leadSNP" indicating whether a SNP has the smallest p-value ("P). If multiple rows have the same p-value, the one with the largest effective size ("Effect") is used as the lead SNP.
Usage
assign_lead_snp(dat, grouping_vars = "Locus", verbose = TRUE)
Arguments
dat |
Fine-mapping data.table. |
grouping_vars |
Column names to group by. |
verbose |
Print messages. |
Value
Modified data.table.
Examples
dat <- echodata::assign_lead_snp(dat = echodata::BST1)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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