auto_topSNPs_sub: Automatically identify top SNP per locus
In RajLabMSSM/echodata: echoverse module: Fine-mapping data access and formatting
View source: R/auto_topSNPs_sub.R
auto_topSNPs_sub R Documentation
Automatically identify top SNP per locus
Description
If no topSNPs dataframe is supplied,
this function will sort by p-value and then effect size,
and use the SNP in the first row.
Usage
auto_topSNPs_sub(topSNPs, query, locus)
Arguments
topSNPs
Output of import_topSNPs.
query
Summary stats subset.
locus
Locus name.
See Also
Other standardization functions:
calculate_tstat()
RajLabMSSM/echodata documentation built on Nov. 21, 2023, 8 a.m.
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View source: R/auto_topSNPs_sub.R
| auto_topSNPs_sub | R Documentation |
Automatically identify top SNP per locus
Description
If no topSNPs dataframe is supplied,
this function will sort by p-value and then effect size,
and use the SNP in the first row.
Usage
auto_topSNPs_sub(topSNPs, query, locus)
Arguments
topSNPs |
Output of import_topSNPs. |
query |
Summary stats subset. |
locus |
Locus name. |
See Also
Other standardization functions:
calculate_tstat()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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