extract_loci: Extract loci from GWAS/QTL summary statistics
In RajLabMSSM/echodata: echoverse module: Fine-mapping data access and formatting
extract_loci R Documentation
Extract loci from GWAS/QTL summary statistics
Description
Extract loci from GWAS/QTL summary statistics
Usage
extract_loci(topSNPs, fullSS, bp_distance = 5e+05, munged = TRUE)
Arguments
topSNPs
Positions of the top SNPs prepare using
import_topSNPs.
fullSS
data.table of the
full GWAS/QTL summary statistics.
bp_distance
The basepair distance upstream/downstream of the proxy
SNP (in topSNPs) to extract.
munged
Whether fullSS was previously munged with
format_sumstats.
RajLabMSSM/echodata documentation built on Nov. 21, 2023, 8 a.m.
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| extract_loci | R Documentation |
Extract loci from GWAS/QTL summary statistics
Description
Extract loci from GWAS/QTL summary statistics
Usage
extract_loci(topSNPs, fullSS, bp_distance = 5e+05, munged = TRUE)
Arguments
topSNPs |
Positions of the top SNPs prepare using import_topSNPs. |
fullSS |
data.table of the full GWAS/QTL summary statistics. |
bp_distance |
The basepair distance upstream/downstream of the proxy
SNP (in |
munged |
Whether |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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