find_consensus_snps: Find Consensus SNPs

In RajLabMSSM/echodata: echoverse module: Fine-mapping data access and formatting

Find Consensus SNPs

Description

Find Consensus SNPs in finemap_loci output.

Usage

find_consensus_snps(
  dat,
  credset_thresh = 0.95,
  consensus_thresh = 2,
  sort_by_support = TRUE,
  exclude_methods = NULL,
  verbose = TRUE
)

Arguments

dat	Fine-mapping results data.
credset_thresh	The minimum mean Posterior Probability (across all fine-mapping methods used) of SNPs to be included in the "mean.CS" column.
consensus_thresh	The minimum number of fine-mapping tools in which a SNP is in the Credible Set in order to be included in the "Consensus_SNP" column.
sort_by_support	Whether to sort SNPs by the "Support" column.
exclude_methods	Whether to exclude results from certain fine-mapping methods when mean/consensus columns.
verbose	Print messages.

Examples

BST1 <- echodata::find_consensus_snps(dat = echodata::BST1)

RajLabMSSM/echodata documentation built on Nov. 21, 2023, 8 a.m.