gene_locus_list: Generate a named list of (e)Gene-Locus pairs

In RajLabMSSM/echodata: echoverse module: Fine-mapping data access and formatting

Generate a named list of (e)Gene-Locus pairs

Description

This object is to be passed to the loci= argument in echolocatoR::finemap_loci().

Usage

gene_locus_list(
  loci = NULL,
  topSNPs = NULL,
  drop_missing_loci = TRUE,
  dataset_type = NULL,
  verbose = TRUE
)

Arguments

loci	User-supplied locus list.
topSNPs	Output of the function import_topSNPs, containing the top (index) SNPs per locus.
drop_missing_loci	Drop loci that are missing from topSNPs$Locus.
dataset_type	The kind dataset you're fine-mapping (e.g. GWAS, eQTL, tQTL).
verbose	Print messages.

Value

Named list

Examples

loci <- gene_locus_list(topSNPs = echodata::topSNPs_Nalls2019,
                        dataset_type = "QTL")

RajLabMSSM/echodata documentation built on Nov. 21, 2023, 8 a.m.