dt_to_granges: Convert data.table to GRanges object

In RajLabMSSM/echodata: echoverse module: Fine-mapping data access and formatting

Convert data.table to GRanges object

Description

Convert data.table/data.frame to a GRanges object.

Usage

dt_to_granges(
  dat,
  chrom_col = "CHR",
  start_col = "POS",
  end_col = start_col,
  style = "NCBI",
  verbose = TRUE
)

Arguments

dat	Data.
chrom_col	Chromosome column name.
start_col	Genomic start position column name.
end_col	Genomic end position column name.
style	GRanges style (e.g. "NCBI, "UCSC") set by seqlevelsStyle.
verbose	Print messages.

Examples

gr <- echodata::dt_to_granges(dat = echodata::BST1)

RajLabMSSM/echodata documentation built on Nov. 21, 2023, 8 a.m.