get_Nalls2019_loci: 'echolocatoR' output example: select loci
In RajLabMSSM/echodata: echoverse module: Fine-mapping data access and formatting

get_Nalls2019_loci

R Documentation

echolocatoR output example: select loci

An example results file after running finemap_loci on 3 Parkinson's disease (PD)-associated loci (BST1, LRRK2, and MEX3C).

Data originally comes from the PD GWAS by Nalls et al. (The Lancet Neurology).

get_Nalls2019_loci(
  save_dir = tempdir(),
  return_paths = TRUE,
  return_dir = FALSE,
  limit_snps = NULL,
  force_new = FALSE,
  verbose = TRUE
)

`save_dir`	Local directory to cache data in.
`return_paths`	Returns local paths to cached fine-mapping results (default: `TRUE`), or the data itself as a named list (`FALSE`).
`return_dir`	Return the directory name instead of the individual file paths.
`limit_snps`	Limit the number of SNPs saved in each file.
`force_new`	Force the creation of new files even if old ones exists.
`verbose`	Print messages.