get_data: Get data

In RajLabMSSM/echodata: echoverse module: Fine-mapping data access and formatting

Get data

Description

Download remote resources stored on GitHub Releases via piggyback.

Usage

get_data(
  fname,
  repo = "RajLabMSSM/echodata",
  save_dir = tools::R_user_dir(package = "echodata", which = "cache"),
  overwrite = FALSE,
  tag = "latest",
  ...
)

Arguments

fname	File name.
repo	GitHub repository name.
save_dir	Local directory to cache data in.
overwrite	Should any local files of the same name be overwritten? default TRUE.
tag	tag for the GitHub release to which this data should be attached.
...	Arguments passed on to piggyback::pb_download file name or vector of names of files to be downloaded. If NULL, all assets attached to the release will be downloaded. dest name of vector of names of where file should be downloaded. Can be a directory or a list of filenames the same length as file vector. Any directories in the path provided must already exist. ignore a list of files to ignore (if downloading "all" because file=NULL). use_timestamps DEPRECATED. show_progress logical, show a progress bar be shown for uploading? Defaults to ⁠[interactive()]⁠ - can also set globally with options("piggyback.verbose") .token GitHub authentication token, see ⁠[gh::gh_token()]⁠

Examples

tmp <- get_data(fname = "Kunkle2019.tsv.gz")

RajLabMSSM/echodata documentation built on Nov. 21, 2023, 8 a.m.