Files in SGDDNB/GeneSwitches
Discover the order of gene regulatory events during cell state transitions
CNAME
DESCRIPTION
GeneSwitches.Rproj
NAMESPACE
R/binarization.R
R/compare_trajectories.R
R/convert_TI.R
R/data.R
R/find_switch_pathway.R
R/fit_logistic_regression.R
R/get_example_inputData.R
R/plot_gene_exp.R
R/plot_timeline.R
README.Rmd
README.md
_config.yml
data-raw/DATASET.R
data/gs_genelists.rda
data/msigdb_h_c2_c5.rda
man/binarize_exp.Rd
man/common_genes.Rd
man/common_genes_plot.Rd
man/convert_monocle2.Rd
man/convert_slingshot.Rd
man/distinct_genes.Rd
man/downsample_zeros.Rd
man/figures/README-binarization cutoff-1.png
man/figures/README-binarization threshold-1.png
man/figures/README-binarization_threshold-1.png
man/figures/README-convert slingshot-1.png
man/figures/README-distinct genes-1.png
man/figures/README-pathways ridge plots-1.png
man/figures/README-pathways-1.png
man/figures/README-pathways_ridge_plots-1.png
man/figures/README-plot common genes-1.png
man/figures/README-plot distinct genes-1.png
man/figures/README-plot exp1-1.png
man/figures/README-plot exp1-2.png
man/figures/README-plot exp2-1.png
man/figures/README-plot pathway genes-1.png
man/figures/README-plot pathways-1.png
man/figures/README-plot scale timeline-1.png
man/figures/README-plot_exp1-1.png
man/figures/README-plot_exp1-2.png
man/figures/README-plot_monocle_trajectory-1.png
man/figures/README-plotexp-1.png
man/figures/README-scale timeline-1.png
man/figures/README-timeline example-1.png
man/figures/README-timeline example-2.png
man/figures/README-unnamed-chunk-4-1.png
man/filter_switchgenes.Rd
man/find_switch_logistic_fastglm.Rd
man/find_switch_pathway.Rd
man/get_example_inputData.Rd
man/gs_genelists.Rd
man/merge_pathways.Rd
man/msigdb_h_c2_c5.Rd
man/phyper_pathway.Rd
man/plot_gene_exp.Rd
man/plot_monocle_State.Rd
man/plot_pathway_density.Rd
man/plot_timeline_ggplot.Rd
man/reduce_pathways.Rd
man/subset_pseudotime.Rd
