R/data.R

In SGDDNB/GeneSwitches: Discover the order of gene regulatory events during cell state transitions

#' An example of gene sets
#'
#' Pathways of GSEA MSigDB hallmark, c2 and c5 gene sets
#'
#' @format A list with 6153 pathways, and genes in each pathway
#'
#' @source \url{http://software.broadinstitute.org/gsea/msigdb/collections.jsp}
"msigdb_h_c2_c5"


#' An example of gene lists
#'
#' Provided gene lists with surface proteins and transctription factors
#'
#' @format A data frame with 3071 rows and 2 columns. rows are genes, and columns are "genenames" and "genetypes".
#'
#' @source \url{http://wlab.ethz.ch/cspa/, http://humantfs.ccbr.utoronto.ca/}
"gs_genelists"