TODO.md

In SingerLab/gac: Genetic Analysis of Cells

TO DO

• [ ] search for single-instance use packages and find a work around
• [ ] Integrate CORE
• [ ] build functions for spatial analysis, need 2d and 3d f(x)
• [ ] generalize to add annotations to gene.index again, hgnc.symbol, use merge w/hgnc.symbol

done

• [x] change annotate_oncoKB to work with gene.index -- hgnc.symbol, use merge w/hgnc.symbol
• [x] same as above with depmap hgnc.symbol, use merge w/hgnc.symbol
• [x] Integrate with kegg pathway views, need entrez ID genes for this
• [X] Document functions
• [x] debug scclust integration
• [x] make a function for calling amplification and deletions on buildDNA -- Bastien
• [x] Integrate scclust

SingerLab/gac documentation built on March 23, 2024, 5:15 a.m.