vcf_communality: VCF communality

In TearsWillFall/variantCall: An implementation of a wrapper for variant calling using MuTECT2 and Platypus GNU/Unix based systems

Description

Estimate % of common SNPs between two VCF files and returns the communality between them

Usage

vcf_communality(
  bin_path = "tools/bcftools/bcftools",
  vcf = "",
  vcf2 = "",
  output_name = "",
  output_dir = "",
  verbose = FALSE
)

Arguments

vcf	REQUIRED Path to VCF file
vcf2	REQUIRED Path to VCF file
output_name	OPTIONAL Name for output_files. IF not given it will use input vcf name
output_dir	OPTIONAL Path to output directory. if not given outputs to current directory.
verbose	OPTIONAL Extra verbose. Default FALSE

TearsWillFall/variantCall documentation built on Oct. 15, 2021, 8:51 p.m.