vcf_concatenate: VCF file concatenation
In TearsWillFall/variantCall: An implementation of a wrapper for variant calling using MuTECT2 and Platypus GNU/Unix based systems
Description
This function concatenates VCF files found in a directory.
Usage
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vcf_concatenate(
bin_path = "tools/bcftools/bcftools",
vcf = "",
vcf_dir = "",
verbose = FALSE,
output_dir = ""
)
Arguments
bin_path
Path to bcftools binary. Default tools/bcftools/bcftools.
vcf
Path to vcf files to concatenate. Only if vcf_dir not given
vcf_dir
Path to directory with vcf files to concatenate. Only if vcf not given
verbose
Enables progress messages. Default False.
output_dir
Path to the output directory.
TearsWillFall/variantCall documentation built on Oct. 15, 2021, 8:51 p.m.
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Description
This function concatenates VCF files found in a directory.
Usage
1 2 3 4 5 6 7 | vcf_concatenate(
bin_path = "tools/bcftools/bcftools",
vcf = "",
vcf_dir = "",
verbose = FALSE,
output_dir = ""
)
|
Arguments
bin_path |
Path to bcftools binary. Default tools/bcftools/bcftools. |
vcf |
Path to vcf files to concatenate. Only if vcf_dir not given |
vcf_dir |
Path to directory with vcf files to concatenate. Only if vcf not given |
verbose |
Enables progress messages. Default False. |
output_dir |
Path to the output directory. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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