vcf_intersect_bed: Intersect vcf with bed file
In TearsWillFall/variantCall: An implementation of a wrapper for variant calling using MuTECT2 and Platypus GNU/Unix based systems
Description
Generate a set of variants covered by the regions found in/out the bed file
Usage
1
vcf_intersect_bed(vcf = "", bed = "", output_name = "", output_dir = "")
Arguments
vcf
REQUIRED Path to VCF file
bed
REQUIRED Path to BED file
output_name
OPTIONAL Name for output_files. IF not given it will use input vcf name
output_dir
OPTIONAL Path to output directory. if not given outputs to current directory.
TearsWillFall/variantCall documentation built on Oct. 15, 2021, 8:51 p.m.
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Description
Generate a set of variants covered by the regions found in/out the bed file
Usage
1 | vcf_intersect_bed(vcf = "", bed = "", output_name = "", output_dir = "")
|
Arguments
vcf |
REQUIRED Path to VCF file |
bed |
REQUIRED Path to BED file |
output_name |
OPTIONAL Name for output_files. IF not given it will use input vcf name |
output_dir |
OPTIONAL Path to output directory. if not given outputs to current directory. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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