This function takes a path to either a vcf file or to a directory of vcf files and outputs an inset/outset between these vcf files.
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bin_path |
REQUIRED Path to bcftools binary. Default tools/bcftools/bcftools |
vcf |
OPTIONAL Path to a single vcf file or a vector of vcf files. Only if vcf_dir is not given. |
vcf_dir |
OPTIONAL Path to a directory with vcf files to generate a set for. Only if vcf is not given. |
set_formula |
REQUIRED Formula to filter variants. Default =+2. |
filter |
OPTIONAL Filter variants by. Default PASS |
output_dir |
OPTIONAL Path to output directory. Default current directory |
verbose |
Optional Enables progress messages. Default False. |
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