Files in USGS-R/repgen
USGS internal report generation

.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/01-repgen.R R/02-templating-class.R R/correctionsataglance-data.R R/correctionsataglance-render.R R/derivationchain-data.R R/derivationchain-render.R R/dvhydrograph-data.R R/dvhydrograph-render.R R/dvhydrograph-styles.R R/examplereport-data.R R/examplereport-render.R R/extremes-data.R R/fiveyeargwsum-render.R R/fiveyeargwsum-styles.R R/sensorreading-data.R R/sig-correctionsataglance.R R/sig-dvhydrograph.R R/sig-extremes.R R/sig-fiveyeargwsum.R R/sig-renderReport.R R/sig-sensorreading.R R/sig-sitevisitpeak.R R/sig-uvhydrograph.R R/sig-vdiagram.R R/sitevisitpeak-data.R R/timeseriessummary-data.R R/timeseriessummary-render.R R/utils-approvals.R R/utils-dataFlags.R R/utils-fetch.R R/utils-filter.R R/utils-gaps.R R/utils-html.R R/utils-legend.R R/utils-limits.R R/utils-parse.r R/utils-plot.R R/utils-read.R R/utils-render.R R/utils-time.R R/utils-validation.R R/uvhydrograph-data.R R/uvhydrograph-render.R R/uvhydrograph-styles.R R/vdiagram-data.R R/vdiagram-render.R R/vdiagram-styles.R README.md
inst/correctionsataglance/_output.yaml
inst/correctionsataglance/after.html
inst/correctionsataglance/before.html
inst/correctionsataglance/correctionsataglance.Rmd
inst/correctionsataglance/styles.css
inst/dvhydrograph/_output.yaml
inst/dvhydrograph/dvhydrograph.Rmd
inst/extdata/correctionsataglance/correctionsataglance-example.json
inst/extdata/correctionsataglance/correctionsataglance-example2.json
inst/extdata/correctionsataglance/correctionsataglance-example3.json
inst/extdata/correctionsataglance/correctionsataglance-example4.json
inst/extdata/correctionsataglance/correctionsataglance-example5.json
inst/extdata/correctionsataglance/correctionsataglance-example6.json
inst/extdata/derivationchain/derivationchain-example.json
inst/extdata/example-report.json
inst/extdata/extremes/extremes-aqcu-unmatched-upchain-min-relatedPrimary.json
inst/extdata/extremes/extremes-eliminate-duplicates.json
inst/extdata/extremes/extremes-example-site-train.json
inst/extdata/extremes/extremes-example-site.json
inst/extdata/extremes/extremes-example.json
inst/extdata/extremes/extremes-multiple-min-max-test.json
inst/extdata/extremes/extremes-no-dv.json
inst/extdata/extremes/extremes-no-points-example.json
inst/extdata/extremes/extremes-no-qualifiers-example.json
inst/extdata/extremes/extremes-no-upchain-no-dv.json
inst/extdata/extremes/extremes-no-upchain.json
inst/extdata/extremes/extremes-train-site-example.json
inst/extdata/installPackages.R
inst/extdata/repgen_dependencies.mm
inst/extdata/sensorreadingsummary/sensorReadingSummary-example-exc-comm.json
inst/extdata/sensorreadingsummary/sensorReadingSummary-example.json
inst/extdata/sensorreadingsummary/sensorReadingSummary-example_w_quals.json
inst/extdata/sitevisitpeak/.gitignore
inst/extdata/sitevisitpeak/sitevisitpeak-empty-example.json
inst/extdata/sitevisitpeak/sitevisitpeak-example-exc-comm.json
inst/extdata/sitevisitpeak/sitevisitpeak-example.json
inst/extdata/sitevisitpeak/sitevisitpeak-exclude-comments-example.json
inst/extdata/testsnippets/test-dvhydrograph.json
inst/extdata/testsnippets/test-extremes-sorting.json
inst/extdata/testsnippets/test-extremes-sortingOrder.json
inst/extdata/testsnippets/test-fiveyeargwsum.json
inst/extdata/testsnippets/test-time-series.json
inst/extdata/testsnippets/test-utils-legend.json
inst/extdata/testsnippets/test-utils-plot.json
inst/extdata/testsnippets/test-uvhydro-Q-no-upchain.json
inst/extdata/testsnippets/test-uvhydro-all-estimated-secondary-series.json
inst/extdata/testsnippets/test-uvhydro-estimated-and-nonestimated-periods.json
inst/extdata/testsnippets/test-uvhydro-gw-no-ref.json
inst/extdata/testsnippets/test-uvhydro-gw-with-ref.json
inst/extdata/testsnippets/test-uvhydro-minimal.json
inst/extdata/testsnippets/test-uvhydro-no-primary-pts.json
inst/extdata/testsnippets/test-uvhydro-no-secondary-pts.json
inst/extdata/testsnippets/test-uvhydro-only-estimated-no-nonestimated-periods.json
inst/extdata/timeseriessummary/timeseriessummary-example.json
inst/extdata/timeseriessummary/timeseriessummary-example2.json
inst/extdata/timeseriessummary/timeseriessummary-example3.json
inst/extdata/timeseriessummary/timeseriessummary-example4.json
inst/extdata/timeseriessummary/timeseriessummary-example5.json
inst/extdata/timeseriessummary/timeseriessummary-example6.json
inst/extdata/uvhydrograph/test-corrected-estimated-periods-uvhydro.json
inst/extdata/uvhydrograph/uvhydro-3-diff-axis.json
inst/extdata/uvhydrograph/uvhydro-3-same-axis.json
inst/extdata/uvhydrograph/uvhydro-allapprovals.json
inst/extdata/uvhydrograph/uvhydro-comp-diff-axis.json
inst/extdata/uvhydrograph/uvhydro-example.json
inst/extdata/uvhydrograph/uvhydro-gh-example.json
inst/extdata/uvhydrograph/uvhydro-groundwater.json
inst/extdata/uvhydrograph/uvhydro-hawaii.json
inst/extdata/uvhydrograph/uvhydro-manygwlevel.json
inst/extdata/uvhydrograph/uvhydro-missingmonth.json
inst/extdata/uvhydrograph/uvhydro-no-primary-data.json
inst/extdata/uvhydrograph/uvhydro-prim-comp-diff-axis.json
inst/extdata/uvhydrograph/uvhydro-prim-ref-diff-axis.json
inst/extdata/uvhydrograph/uvhydro-prim-ref-same-axis.json
inst/extdata/uvhydrograph/uvhydro-ref-comp-same-axis.json
inst/extdata/uvhydrograph/uvhydro-ref-diff-axis.json
inst/extdata/uvhydrograph/uvhydro-watertemp-example.json
inst/extdata/uvhydrograph/uvhydro-wq-example.json
inst/extdata/vdiagram/vdiagram-5yr-example.json
inst/extdata/vdiagram/vdiagram-example.json
inst/extdata/vdiagram/vdiagram-excluded-conditions.json
inst/extdata/vdiagram/vdiagram-no_gage_heights.json
inst/extdata/vdiagram/vdiagram-no_gage_heights_historic.json
inst/extremes/_output.yaml
inst/extremes/extremes.Rmd
inst/extremes/styles.css
inst/fiveyeargwsum/_output.yaml
inst/fiveyeargwsum/fiveyeargwsum.Rmd
inst/sensorreading/_output.yaml
inst/sensorreading/after.html
inst/sensorreading/before.html
inst/sensorreading/sensorreading.Rmd
inst/sensorreading/styles.css
inst/shared/libs/bootstrap/3.3.5/css/bootstrap.min.css
inst/shared/libs/bootstrap/3.3.5/js/bootstrap.min.js
inst/shared/libs/cytoscape/3.1.0/cytoscape.min.js
inst/shared/libs/cytoscape/cytoscape.js-cose-bilkent/1.6.5/cytoscape-cose-bilkent.js
inst/shared/libs/cytoscape/cytoscape.js-qtip/2.7.0/cytoscape-qtip.js
inst/shared/libs/jquery/2.1.4/jquery.min.js
inst/shared/libs/qtip2/2.2.0/jquery.qtip.min.css
inst/shared/libs/qtip2/2.2.0/jquery.qtip.min.js
inst/shared/libs/sortable/0.8.0/sortable-theme-slick.css
inst/shared/libs/sortable/0.8.0/sortable.min.js
inst/shared/shared-header.Rmd
inst/shared/shared-styles.css
inst/shared/usgs_logo.jpg
inst/sitevisitpeak/_output.yaml
inst/sitevisitpeak/after.html
inst/sitevisitpeak/before.html
inst/sitevisitpeak/sitevisitpeak.Rmd
inst/sitevisitpeak/styles.css
inst/templates/common/header.mustache
inst/templates/common/report.mustache
inst/templates/common/shared.css
inst/templates/derivationchain/aquarius-time-series.svg
inst/templates/derivationchain/basic-time-series-description.png
inst/templates/derivationchain/body.mustache
inst/templates/derivationchain/css.imports
inst/templates/derivationchain/custom.css
inst/templates/derivationchain/custom.js
inst/templates/derivationchain/external-time-series-arrow.png
inst/templates/derivationchain/js.imports
inst/templates/derivationchain/processor-derived-time-series-description.png
inst/templates/derivationchain/time-series-icons-basic.png
inst/templates/derivationchain/time-series-icons-calculated.png
inst/templates/derivationchain/time-series-icons-datum-conversion-derived.png
inst/templates/derivationchain/time-series-icons-derived-pass-through.png
inst/templates/derivationchain/time-series-icons-external.png
inst/templates/derivationchain/time-series-icons-fill-missing-data-derived.png
inst/templates/derivationchain/time-series-icons-no-processing-plans.png
inst/templates/derivationchain/time-series-icons-rating-model-derived.png
inst/templates/derivationchain/time-series-icons-statistical-derived.png
inst/templates/examplereport/README.md
inst/templates/examplereport/body.mustache
inst/templates/examplereport/css.imports
inst/templates/examplereport/custom.css
inst/templates/examplereport/custom.js
inst/templates/examplereport/js.imports
inst/templates/examplereport/partials/first_partial.mustache
inst/templates/examplereport/partials/second_partial.mustache
inst/templates/timeseriessummary/body.mustache
inst/templates/timeseriessummary/css.imports
inst/templates/timeseriessummary/custom.css
inst/templates/timeseriessummary/custom.js
inst/templates/timeseriessummary/js.imports
inst/uvhydrograph/_output.yaml
inst/uvhydrograph/styles.css
inst/uvhydrograph/uvhydrograph.Rmd
inst/vdiagram/_output.yaml
inst/vdiagram/styles.css
inst/vdiagram/vdiagram.Rmd man/DelineateYearBoundaries.Rd man/RescaleYTop.Rd man/XAxisLabelStyle.Rd man/XAxisLabels.Rd man/addGroupCol.Rd man/addMeasurementsAndError.Rd man/addRatingShifts.Rd man/addToGsplot.Rd man/adjustCorrectionTypes.Rd man/anyDataExist.Rd man/applyDataGaps.Rd man/applyQualifiers.Rd man/applyQualifiersToValues.Rd man/approvalBarY.Rd man/approvalBarYBottom.Rd man/approvalBarYTop.Rd man/as.character.repgendate.Rd man/as.repgendate.Rd man/attachFullDataToSubFrame.Rd man/boundDate.Rd man/boundLaneDates.Rd man/bufferLims.Rd man/calcEndSeq.Rd man/calcStartSeq.Rd man/calculateLims.Rd man/calculateTotalDays.Rd man/checkRequiredFields.Rd man/cleanTempSpace.Rd man/containsOutsideUncertainty.Rd man/convertStringToTableDisplay.Rd man/convertTableDisplayToString.Rd man/correctionsataglance.Rd man/correctionsataglanceReport.Rd man/createApprovalLane.Rd man/createControlConditionsString.Rd man/createDVHydrographPlot.Rd man/createDVHydrographRefPlot.Rd man/createDataRows.Rd man/createGapsFromEstimatedPeriods.Rd man/createLabelTable.Rd man/createLane.Rd man/createOutputDir.Rd man/createPlotLanes.Rd man/createPrimaryPlot.Rd man/createSecondaryPlot.Rd man/defaultHistFlags.Rd man/doAddToPlot.Rd man/dvhydrograph.Rd man/examplereport-class.Rd man/excludedConditionsMessage.Rd man/extendStep.Rd man/extendYaxisLimits.Rd man/extremes.Rd man/extremesQualifiersTable.Rd man/extremesTable.Rd man/fetchApprovals.Rd man/fetchApprovalsForSeries.Rd man/fetchCorrReportURL.Rd man/fetchCorrections.Rd man/fetchDownchainSeries.Rd man/fetchExcludedControlConditions.Rd man/fetchFieldVisitMeasurements.Rd man/fetchFieldVisitReadings.Rd man/fetchFieldVists.Rd man/fetchGapTolerances.Rd man/fetchGaps.Rd man/fetchGrades.Rd man/fetchGroundWaterLevels.Rd man/fetchInterpolationTypes.Rd man/fetchMaxStage.Rd man/fetchMeasurements.Rd man/fetchMeasurementsField.Rd man/fetchMethods.Rd man/fetchMinMaxIVs.Rd man/fetchMinStage.Rd man/fetchNotes.Rd man/fetchPrimarySeriesApprovals.Rd man/fetchPrimarySeriesQualifiers.Rd man/fetchPrimaryTSMetadata.Rd man/fetchProcessingCorrections.Rd man/fetchProcessors.Rd man/fetchQualifiers.Rd man/fetchRatingCurves.Rd man/fetchRatingShifts.Rd man/fetchRatingShiftsField.Rd man/fetchReportMetadata.Rd man/fetchReportMetadataField.Rd man/fetchThresholds.Rd man/fetchTimeSeries.Rd man/fetchUpchainSeries.Rd man/fetchWaterQualityMeasurements.Rd man/fieldExists.Rd man/filterAndMarkDuplicates.Rd man/findDefinedGaps.Rd man/findOverlap.Rd man/findTextLocations.Rd man/findZeroNegativeGaps.Rd man/fiveyeargwsum.Rd man/flexibleTimeParse.Rd man/formatAdvReportOptions.Rd man/formatComments.Rd man/formatCorrectionsParamAdjustableTrim.Rd man/formatCorrectionsParamDeviation.Rd man/formatCorrectionsParamDrift.Rd man/formatCorrectionsParamFillGaps.Rd man/formatCorrectionsParamOffset.Rd man/formatCorrectionsParamSinglePoint.Rd man/formatCorrectionsParamUSGSMultiPoint.Rd man/formatDataTable.Rd man/formatMinMaxLabel.Rd man/formatOpenDateLabel.Rd man/formatPersistenceGapFill.Rd man/formatQualifiersStringList.Rd man/formatQualifiersTable.Rd man/formatSensorData.Rd man/formatSplitTimeSeriesForPlotting.Rd man/formatTimeSeriesForPlotting.Rd man/formatUTCTimeLabel.Rd man/getAppliedCorrection.Rd man/getApprovalBarConfig.Rd man/getApprovalBarStyles.Rd man/getComments.Rd man/getCorrectedRef.Rd man/getCorrectionsPlotConfig.Rd man/getDVHydrographPlotConfig.Rd man/getDVHydrographRefPlotConfig.Rd man/getDvPlotConfig.Rd man/getEffectiveShiftPlotConfig.Rd man/getErrorBarYLims.Rd man/getEstimatedEdges.Rd man/getExtremesConstants.Rd man/getExtremesTableQualifiers.Rd man/getGageHeightPlotConfig.Rd man/getGwPlotConfig.Rd man/getIndicatedCorrection.Rd man/getLaneLabelData.Rd man/getLaneYData.Rd man/getLogo.Rd man/getMeasQPlotConfig.Rd man/getMeasuredShiftPlotConfig.Rd man/getMonths.Rd man/getPrimaryPlotConfig.Rd man/getPrimaryReportElements.Rd man/getRatingShiftsPlotConfig.Rd man/getReadingsPlotConfig.Rd man/getRecorderWithinUncertainty.Rd man/getSVPColumns.Rd man/getSecondaryPlotConfig.Rd man/getSecondaryReportElements.Rd man/getSimsUrl.Rd man/getSrsPrecision.Rd man/getTimeSeriesLabel.Rd man/getUniqueComments.Rd man/getUvStyles.Rd man/getVerticalFlagArrows.Rd man/getVerticalFlagPositions.Rd man/getWaterDataUrl.Rd man/getWqPlotConfig.Rd man/hasEnoughVdiagramData.Rd man/hasReferenceSeries.Rd man/hasUpchainSeries.Rd man/hasValidDataToPlot.Rd man/historyMeasurementsLabel.Rd man/is.repgendate.Rd man/isEmpty.Rd man/isEmptyOrBlank.Rd man/isEmptyVar.Rd man/isFirstDayOfMonth.Rd man/isLogged.Rd man/isNullOrFalse.Rd man/isPrimaryDischarge.Rd man/isTextLong.Rd man/isTimeSeriesInverted.Rd man/labelDateSeq.Rd man/loadCommonCssBase64.Rd man/loadCommonTemplate.Rd man/loadCustomCssBase64.Rd man/loadCustomJsBase64.Rd man/loadImportsIntoListBase64.Rd man/loadLegendSymbologyDerivationChain.Rd man/loadPartialsListForReport.Rd man/loadReportTemplate.Rd man/loadUsgsLogoBase64.Rd man/log_tick_marks.Rd man/mergeAndStretch.Rd man/mergeLists.Rd man/negValues.Rd man/nullMask.Rd man/parseApprovals.Rd man/parseCorrApprovals.Rd man/parseCorrFieldVisits.Rd man/parseCorrGrades.Rd man/parseCorrNotes.Rd man/parseCorrProcessingCorrections.Rd man/parseCorrQualifiers.Rd man/parseCorrThresholds.Rd man/parseCorrectionsAsTable.Rd man/parseCorrectionsByMonth.Rd man/parseCustomDataElementsForTemplate.Rd man/parseCustomDataElementsForTemplateForDerivationChain.Rd man/parseCustomDataElementsForTemplateForTimeSeriesSummary.Rd man/parseExcludedControlConditions.Rd man/parseFieldMeasurementData.Rd man/parseFieldVisitMeasurements.Rd man/parseFieldVisitReadings.Rd man/parseGaps.Rd man/parseGroundWaterLevels.Rd man/parseMinMaxIV.Rd man/parseMinMaxIVs.Rd man/parsePrimaryDvList.Rd man/parsePrimarySeriesApprovals.Rd man/parsePrimarySeriesList.Rd man/parsePrimarySeriesQualifiers.Rd man/parseProcessingCorrections.Rd man/parseRatingShiftsAsTable.Rd man/parseRatingShiftsByMonth.Rd man/parseRatingShiftsData.Rd man/parseReportMetadataField.Rd man/parseSecondaryCorrectionsByMonth.Rd man/parseSecondarySeriesList.Rd man/parseTSSApprovals.Rd man/parseTSSGapTolerances.Rd man/parseTSSGaps.Rd man/parseTSSGrades.Rd man/parseTSSInterpolationTypes.Rd man/parseTSSMethods.Rd man/parseTSSNotes.Rd man/parseTSSPrimaryTsMetadata.Rd man/parseTSSProcessingCorrections.Rd man/parseTSSProcessors.Rd man/parseTSSQualifiers.Rd man/parseTSSRatingCurves.Rd man/parseTSSRatingShifts.Rd man/parseTSSRelatedSeries.Rd man/parseTSSThresholds.Rd man/parseThresholds.Rd man/parseTimeSeries.Rd man/parseUvComparisonSeriesByMonth.Rd man/parseUvEstimatedSeries.Rd man/parseUvNonEstimatedSeries.Rd man/parseUvTimeInformationFromLims.Rd man/parseVerticalFlagLabelSpacing.Rd man/parseWaterQualityMeasurements.Rd man/plotDVHydroLegend.Rd man/plotFiveYearLegend.Rd man/plotItem.Rd man/plotLanes.Rd man/plotTimeSeries.Rd man/plus-repgendate-Period-method.Rd man/print.repgendate.Rd man/printReportFeature.Rd man/printWithThirdYAxis.Rd man/readAllFieldVisitQualifiers.Rd man/readAllUvReadings.Rd man/readApprovalBar.Rd man/readApprovalIndex.Rd man/readApprovalPoints.Rd man/readApprovalRanges.Rd man/readApprovals.Rd man/readCorrections.Rd man/readDownchainSeries.Rd man/readEffectiveShifts.Rd man/readEstimatedTimeSeries.Rd man/readExcludedControlConditions.Rd man/readFetchedQualifiers.Rd man/readFieldVisitMeasurementsQPoints.Rd man/readFieldVisitMeasurementsShifts.Rd man/readFieldVisitReadings.Rd man/readFieldVists.Rd man/readGapTolerances.Rd man/readGaps.Rd man/readGrades.Rd man/readGroundWaterLevels.Rd man/readInterpolationTypes.Rd man/readIvDifference.Rd man/readMeanGageHeights.Rd man/readMethods.Rd man/readMinMaxIVs.Rd man/readNonEstimatedTimeSeries.Rd man/readNotes.Rd man/readPrimarySeriesApprovals.Rd man/readPrimarySeriesQualifiers.Rd man/readPrimaryTSMetadata.Rd man/readPrimaryUvHydroApprovalBars.Rd man/readProcessingCorrections.Rd man/readProcessors.Rd man/readQualifiers.Rd man/readRatingCurves.Rd man/readRatingShifts.Rd man/readRatingShiftsUvHydro.Rd man/readReadings.Rd man/readReportMetadataField.Rd man/readSecondaryTimeSeriesUvInfo.Rd man/readSecondaryUvHydroApprovalBars.Rd man/readThresholds.Rd man/readTimeSeries.Rd man/readTimeSeriesUvInfo.Rd man/readUpchainSeries.Rd man/readUvGageHeight.Rd man/readUvGwLevel.Rd man/readUvMeasurementShifts.Rd man/readUvQMeasurements.Rd man/readUvWq.Rd man/readWaterQualityMeasurements.Rd man/removeZeroNegative.Rd man/remove_repgendate.Rd man/renderCustomFragments.Rd man/renderReport.Rd man/renderVDiagram.Rd man/rmDuplicateLegendItems.Rd man/sensorreadingTable.Rd man/sensorreadingsummary.Rd man/sitevisitpeak.Rd man/sitevisitpeakTable.Rd man/sizeOf.Rd man/sortDataAndSides.Rd man/splitDataGapsList.Rd man/splitDataGapsTimeSeries.Rd man/splitShiftedLabels.Rd man/startRender.Rd man/startTemplatedRender.Rd man/subsetByMonth.Rd man/testCallouts.Rd man/testCalloutsByView.Rd man/timeFormatting.Rd man/toEndOfDay.Rd man/toEndOfMonth.Rd man/toEndOfTime.Rd man/toSentenceCase.Rd man/toStartOfDay.Rd man/toStartOfMonth.Rd man/unNestCorrectionParameters.Rd man/useSecondaryPlot.Rd man/uvhydrograph.Rd man/uvhydrographPlot.Rd man/validParam.Rd man/validateFetchedData.Rd man/vdiagram.Rd man/vdiagramTable.Rd man/xposGroupValue.Rd man/yposGroupValue.Rd man/zeroValues.Rd tests/testthat.R tests/testthat/test-correctionsataglance.R tests/testthat/test-derivationchain.R tests/testthat/test-dvhydrograph.R tests/testthat/test-extremes.R tests/testthat/test-fiveyeargwsum.R tests/testthat/test-reportRender.R tests/testthat/test-sensorreadingsummary.R tests/testthat/test-sitevisitpeak.R tests/testthat/test-timeseriessummary.R tests/testthat/test-utils-approvals.R tests/testthat/test-utils-dataFlags.R tests/testthat/test-utils-fetch.R tests/testthat/test-utils-filter.R tests/testthat/test-utils-gaps.R tests/testthat/test-utils-html.R tests/testthat/test-utils-legend.R tests/testthat/test-utils-limits.R tests/testthat/test-utils-parse.R tests/testthat/test-utils-plot.R tests/testthat/test-utils-read.R tests/testthat/test-utils-time.R tests/testthat/test-utils-validation.R tests/testthat/test-uvhydrograph-parsePrimarySeriesList.R tests/testthat/test-uvhydrograph-parseSecondarySeriesList.R tests/testthat/test-uvhydrograph-render.R tests/testthat/test-uvhydrograph.R tests/testthat/test-vdiagram.R
USGS-R/repgen documentation built on Nov. 8, 2017, 1:05 a.m.