| %<>% |
Man page
|
| %>% |
Man page
|
| .aggregate_clade |
Source code
|
| .as.MPSE.TSE |
Source code
|
| .as.MPSE.biom |
Source code
|
| .as.MPSE.grouped_df_mpse |
Source code
|
| .as.MPSE.phyloseq |
Source code
|
| .as.MPSE.tbl_mpse |
Source code
|
| .as_tibble.mp.internal |
Source code
|
| .as_tibble_MPSE |
Source code
|
| .balance_clade |
Source code
|
| .balance_offspring_node |
Source code
|
| .build_mpse |
Source code
|
| .build_ps |
Source code
|
| .build_up_and_down |
Source code
|
| .check_tree_tiplab |
Source code
|
| .combine_others |
Source code
|
| .convert_balance_tip2ancestors |
Source code
|
| .convert_tips2ancestors_sbp |
Source code
|
| .dist_to_df |
Source code
|
| .extract_nodes |
Source code
|
| .generate_tip.len |
Source code
|
| .internal_aggregate |
Source code
|
| .internal_append |
Source code
|
| .internal_apply_cal_rarecurve |
Source code
|
| .internal_balance |
Source code
|
| .internal_build_assay |
Source code
|
| .internal_cal_adonis |
Source code
|
| .internal_cal_aed |
Source code
|
| .internal_cal_all_pd_metric |
Source code
|
| .internal_cal_anosim_mrpp |
Source code
|
| .internal_cal_clust |
Source code
|
| .internal_cal_dca |
Source code
|
| .internal_cal_dist |
Source code
|
| .internal_cal_divergence |
Source code
|
| .internal_cal_dmn |
Source code
|
| .internal_cal_dmngroup |
Source code
|
| .internal_cal_eaed |
Source code
|
| .internal_cal_envfit |
Source code
|
| .internal_cal_feature_abun |
Source code
|
| .internal_cal_haed |
Source code
|
| .internal_cal_iac |
Source code
|
| .internal_cal_inode |
Source code
|
| .internal_cal_nmds |
Source code
|
| .internal_cal_nri |
Source code
|
| .internal_cal_nti |
Source code
|
| .internal_cal_pae |
Source code
|
| .internal_cal_pca |
Source code
|
| .internal_cal_pcoa |
Source code
|
| .internal_cal_pd_metric |
Source code
|
| .internal_cal_pd_metric_ |
Source code
|
| .internal_cal_rda_cca1 |
Source code
|
| .internal_cal_rda_cca2 |
Source code
|
| .internal_cal_upset |
Source code
|
| .internal_cal_venn |
Source code
|
| .internal_check_mutate |
Source code
|
| .internal_check_taxonomy |
Source code
|
| .internal_decostand |
Source code
|
| .internal_denom |
Source code
|
| .internal_extract_abundance |
Source code
|
| .internal_extract_binary |
Source code
|
| .internal_extract_sample |
Source code
|
| .internal_extract_taxonomy_ |
Source code
|
| .internal_filter_taxa |
Source code
|
| .internal_import_dada2 |
Source code
|
| .internal_import_qiime |
Source code
|
| .internal_import_qiime2 |
Source code
|
| .internal_mntd |
Source code
|
| .internal_mp_aggregate |
Source code
|
| .internal_mp_cal_alpha |
Source code
|
| .internal_mp_cal_rarecurve |
Source code
|
| .internal_mp_cal_upset |
Source code
|
| .internal_mp_cal_venn |
Source code
|
| .internal_mp_diff_analysis |
Source code
|
| .internal_mp_diff_clade |
Source code
|
| .internal_mp_mantel |
Source code
|
| .internal_mp_rrarefy |
Source code
|
| .internal_mpd |
Source code
|
| .internal_nest |
Source code
|
| .internal_nest_tibble |
Source code
|
| .internal_plot_abundance |
Source code
|
| .internal_reroot |
Source code
|
| .internal_stat_taxa |
Source code
|
| .internal_tax_table |
Source code
|
| .internal_taxonomy |
Source code
|
| .internal_valid_rare |
Source code
|
| .make_random_label |
Source code
|
| .onAttach |
Source code
|
| .return_wrap |
Source code
|
| .valid.MPSE |
Source code
|
| ImportDada2 |
Man page
|
| ImportQiime2 |
Man page
|
| LDAeffectsize |
Source code
|
| MPSE |
Man page
Source code
|
| MPSE-accessors |
Man page
|
| MPSE-class |
Man page
|
| MP_citations |
Source code
|
| [,MPSE,ANY,ANY,ANY-method |
Man page
|
| `$.diffAnalysisClass` |
Source code
|
| `[.diffAnalysisClass` |
Source code
|
| `[.tbl_mpse` |
Source code
|
| `[[.diffAnalysisClass` |
Source code
|
| add_attr |
Source code
|
| add_internal_attr |
Source code
|
| add_total_attr |
Source code
|
| addtaxlevel |
Source code
|
| alphasample-class |
Man page
|
| arrange |
Man page
|
| arrange.MPSE |
Source code
|
| arrange.grouped_df_mpse |
Source code
|
| arrange.tbl_mpse |
Source code
|
| as.MPSE |
Man page
Source code
|
| as.data.frame.MPSE |
Source code
|
| as.data.frame.alphasample |
Source code
|
| as.data.frame.diffAnalysisClass |
Source code
|
| as.mpse |
Man page
|
| as.phyloseq |
Man page
Source code
|
| as.phyloseq.MPSE |
Man page
Source code
|
| as.phyloseq.tbl_mpse |
Man page
|
| as.tbl_mpse |
Source code
|
| as.tbl_mpse.data.frame |
Source code
|
| as.treedata |
Man page
|
| as.treedata.taxonomyTable |
Man page
Source code
|
| as.treedata.treedata |
Source code
|
| as_phyloseq |
Man page
|
| as_tibble |
Man page
|
| as_tibble.DFrame |
Source code
|
| as_tibble.MPSE |
Source code
|
| as_tibble.grouped_df_mpse |
Source code
|
| as_tibble.phyloseq |
Source code
|
| avoid_conflict_names |
Source code
|
| build_tree |
Man page
|
| build_tree,DNAStringSet |
Man page
|
| build_tree,DNAStringSet-method |
Man page
|
| build_tree,DNAbin |
Man page
|
| build_tree,DNAbin-method |
Man page
|
| build_tree,character |
Man page
|
| build_tree,character-method |
Man page
|
| cal_Unifrac_dist |
Source code
|
| cal_ci |
Source code
|
| cal_dist_hopach |
Source code
|
| cal_treedist |
Source code
Source code
|
| check_second_fun |
Source code
|
| check_single_nrow_in_nest |
Source code
|
| check_symbols |
Source code
|
| checkotu |
Source code
|
| checksample |
Source code
|
| colData |
Man page
|
| colData<- |
Man page
|
| colData<-,MPSE,DataFrame-method |
Man page
|
| colData<-,MPSE,NULL-method |
Man page
|
| compare_mean |
Source code
|
| compare_mean.default |
Source code
|
| compare_mean.formula |
Source code
|
| compare_median |
Source code
|
| compare_median.formula |
Source code
|
| contribution |
Source code
|
| convert_to_treedata |
Man page
Source code
|
| convert_to_treedata2 |
Source code
|
| data-hmp_aerobiosis_small |
Man page
|
| data-kostic2012crc |
Man page
|
| data-test_otu_data |
Man page
|
| diffAnalysisClass-class |
Man page
|
| diff_analysis |
Man page
Source code
|
| diff_analysis.data.frame |
Man page
Source code
|
| diff_analysis.phyloseq |
Man page
Source code
|
| diffclass |
Source code
|
| diffsubclass |
Source code
|
| dim.diffAnalysisClass |
Source code
|
| distinct |
Man page
|
| distinct.MPSE |
Source code
|
| distinct.grouped_df_mpse |
Source code
|
| distinct.tbl_mpse |
Source code
|
| dr_extract |
Man page
Source code
|
| drop_class |
Source code
|
| drop_taxa |
Man page
|
| drop_taxa,data.frame |
Man page
|
| drop_taxa,data.frame-method |
Man page
|
| drop_taxa,phyloseq |
Man page
|
| drop_taxa,phyloseq-method |
Man page
|
| duplicatedtaxcheck |
Source code
|
| extract |
Man page
|
| extract_args |
Source code
|
| extract_binary_offspring |
Man page
Source code
|
| extract_binary_offspring.phylo |
Source code
|
| extract_binary_offspring.treedata |
Source code
|
| extract_first_vars |
Source code
|
| fillNAtax |
Source code
|
| filltaxname |
Source code
|
| filter |
Man page
|
| filter.MPSE |
Source code
|
| filter.alphasample |
Source code
|
| filter.diffAnalysisClass |
Source code
|
| filter.grouped_df_mpse |
Source code
|
| filter.tbl_mpse |
Source code
|
| formatted_out |
Source code
|
| fortify |
Man page
|
| fortify.MPSE |
Source code
|
| fortify.SummarizedExperiment |
Source code
|
| generalizedFC |
Man page
Source code
|
| generalizedFC.default |
Man page
Source code
|
| generalizedFC.formula |
Man page
Source code
|
| geom_ord_ellipse |
Source code
|
| geometric.mean |
Source code
|
| get_NRI_NTI |
Man page
|
| get_NRI_NTI,data.frame |
Man page
|
| get_NRI_NTI,data.frame-method |
Man page
|
| get_NRI_NTI,matrix |
Man page
|
| get_NRI_NTI,matrix-method |
Man page
|
| get_NRI_NTI,phyloseq |
Man page
|
| get_NRI_NTI,phyloseq-method |
Man page
|
| get_alltaxadf |
Man page
|
| get_alltaxadf,data.frame |
Man page
|
| get_alltaxadf,data.frame-method |
Man page
|
| get_alltaxadf,phyloseq |
Man page
|
| get_alltaxadf,phyloseq-method |
Man page
|
| get_alltaxdf |
Source code
|
| get_alphaindex |
Man page
|
| get_alphaindex,data.frame |
Man page
|
| get_alphaindex,data.frame-method |
Man page
|
| get_alphaindex,integer |
Man page
|
| get_alphaindex,integer-method |
Man page
|
| get_alphaindex,matrix |
Man page
|
| get_alphaindex,matrix-method |
Man page
|
| get_alphaindex,numeric |
Man page
|
| get_alphaindex,numeric-method |
Man page
|
| get_alphaindex,phyloseq |
Man page
|
| get_alphaindex,phyloseq-method |
Man page
|
| get_anova |
Source code
|
| get_class2sub |
Source code
|
| get_classlevels |
Source code
|
| get_clust |
Man page
Source code
|
| get_clust.data.frame |
Man page
Source code
|
| get_clust.dist |
Man page
Source code
|
| get_clust.phyloseq |
Man page
Source code
|
| get_compareclass |
Source code
|
| get_comparelist |
Source code
|
| get_compareres |
Source code
|
| get_comparesubclass |
Source code
|
| get_consistentfeatures |
Source code
|
| get_coord |
Man page
Source code
|
| get_coord.pcoa |
Man page
Source code
|
| get_coord.prcomp |
Man page
Source code
|
| get_count |
Man page
Source code
|
| get_dist |
Man page
Source code
|
| get_dist.data.frame |
Man page
Source code
|
| get_dist.phyloseq |
Man page
Source code
|
| get_ellipsemap |
Source code
|
| get_factormap |
Source code
|
| get_gfc_wilc |
Source code
|
| get_mean_median |
Man page
Source code
|
| get_node |
Source code
|
| get_otudata |
Source code
|
| get_pca |
Man page
Source code
|
| get_pca.data.frame |
Man page
Source code
|
| get_pca.phyloseq |
Man page
Source code
|
| get_pcoa |
Man page
Source code
|
| get_pcoa.data.frame |
Man page
Source code
|
| get_pcoa.dist |
Man page
Source code
|
| get_pcoa.phyloseq |
Man page
Source code
|
| get_pvalue |
Man page
Source code
|
| get_pvalue.QuadTypeIndependenceTest |
Man page
Source code
|
| get_pvalue.ScalarIndependenceTest |
Man page
Source code
|
| get_pvalue.glm |
Man page
Source code
|
| get_pvalue.htest |
Man page
Source code
|
| get_pvalue.lm |
Man page
Source code
|
| get_pvalue.lme |
Man page
Source code
|
| get_pvalue.negbin |
Man page
Source code
|
| get_rarecurve |
Man page
|
| get_rarecurve,data.frame |
Man page
|
| get_rarecurve,data.frame-method |
Man page
|
| get_rarecurve,phyloseq |
Man page
|
| get_rarecurve,phyloseq-method |
Man page
|
| get_ratio |
Man page
Source code
|
| get_sample |
Source code
|
| get_sampledflist |
Man page
Source code
|
| get_second_true_var |
Source code
|
| get_secondvarlist |
Source code
|
| get_taxadf |
Man page
|
| get_taxadf,data.frame |
Man page
|
| get_taxadf,data.frame-method |
Man page
|
| get_taxadf,phyloseq |
Man page
|
| get_taxadf,phyloseq-method |
Man page
|
| get_upset |
Man page
|
| get_upset,data.frame |
Man page
|
| get_upset,data.frame-method |
Man page
|
| get_upset,phyloseq |
Man page
|
| get_upset,phyloseq-method |
Man page
|
| get_varct |
Man page
Source code
|
| get_varct.pcasample |
Man page
Source code
|
| get_varct.pcoa |
Man page
Source code
|
| get_varct.prcomp |
Man page
Source code
|
| get_varlist |
Source code
|
| get_vennlist |
Man page
|
| get_vennlist,data.frame-method |
Man page
|
| get_vennlist,data.framet |
Man page
|
| get_vennlist,phyloseq |
Man page
|
| get_vennlist,phyloseq-method |
Man page
|
| ggbartax |
Man page
Source code
|
| ggbartax.data.frame |
Man page
Source code
|
| ggbartax.phyloseq |
Man page
Source code
|
| ggbartaxa |
Man page
|
| ggbox |
Man page
|
| ggbox,alphasample |
Man page
|
| ggbox,alphasample-method |
Man page
|
| ggbox,data.frame |
Man page
|
| ggbox,data.frame-method |
Man page
|
| ggclust |
Man page
Source code
|
| ggclust.treedata |
Man page
Source code
|
| ggdiffbartaxa |
Man page
|
| ggdiffbox |
Man page
|
| ggdiffbox,diffAnalysisClass |
Man page
|
| ggdiffbox,diffAnalysisClass-method |
Man page
|
| ggdiffclade |
Man page
Source code
|
| ggdiffclade.data.frame |
Man page
Source code
|
| ggdiffclade.diffAnalysisClass |
Man page
Source code
|
| ggdifftaxbar |
Man page
Source code
|
| ggdifftaxbar,diffAnalysisClass |
Man page
|
| ggdifftaxbar,diffAnalysisClass-method |
Man page
|
| ggdifftaxbar.featureMeanMedian |
Man page
Source code
|
| ggeffectsize |
Man page
Source code
|
| ggeffectsize.data.frame |
Man page
Source code
|
| ggeffectsize.diffAnalysisClass |
Man page
|
| ggordpoint |
Man page
Source code
|
| ggordpoint.default |
Man page
Source code
|
| ggordpoint.pcasample |
Man page
Source code
|
| ggrarecurve |
Man page
Source code
|
| ggrarecurve.data.frame |
Man page
Source code
|
| ggrarecurve.phyloseq |
Man page
Source code
|
| ggrarecurve.rarecurve |
Man page
Source code
|
| grepl.data.frame |
Source code
|
| group_by |
Man page
|
| group_by.MPSE |
Source code
|
| group_by.tbl_mpse |
Source code
|
| head.alphasample |
Source code
|
| head.diffAnalysisClass |
Source code
|
| hmp_aerobiosis_small |
Man page
|
| import_dada2 |
Man page
Source code
|
| import_qiime2 |
Man page
Source code
|
| internal_filter |
Source code
|
| internal_select |
Source code
|
| keep_know_taxa |
Source code
|
| keep_mpse_message |
Source code
|
| kostic2012crc |
Man page
|
| left_join |
Man page
|
| left_join.MPSE |
Source code
|
| mappingtaxda |
Source code
|
| merge_total_res |
Source code
|
| message_wrap |
Source code
|
| modify_AsIs_list |
Source code
|
| mouse.time.mpse |
Man page
|
| mp_adonis |
Man page
|
| mp_adonis,MPSE |
Man page
|
| mp_adonis,MPSE-method |
Man page
|
| mp_adonis,grouped_df_mpse |
Man page
|
| mp_adonis,grouped_df_mpse-method |
Man page
|
| mp_adonis,tbl_mpse |
Man page
|
| mp_adonis,tbl_mpse-method |
Man page
|
| mp_aggregate |
Man page
|
| mp_aggregate,MPSE |
Man page
|
| mp_aggregate,MPSE-method |
Man page
|
| mp_aggregate_clade |
Man page
|
| mp_aggregate_clade,MPSE |
Man page
|
| mp_aggregate_clade,MPSE-method |
Man page
|
| mp_aggregate_clade,grouped_df_mpse |
Man page
|
| mp_aggregate_clade,grouped_df_mpse-method |
Man page
|
| mp_aggregate_clade,tbl_mpse |
Man page
|
| mp_aggregate_clade,tbl_mpse-method |
Man page
|
| mp_anosim |
Man page
|
| mp_anosim,MPSE |
Man page
|
| mp_anosim,MPSE-method |
Man page
|
| mp_anosim,grouped_df_mpse |
Man page
|
| mp_anosim,grouped_df_mpse-method |
Man page
|
| mp_anosim,tbl_mpse |
Man page
|
| mp_anosim,tbl_mpse-method |
Man page
|
| mp_balance_clade |
Man page
|
| mp_balance_clade,MPSE |
Man page
|
| mp_balance_clade,MPSE-method |
Man page
|
| mp_balance_clade,grouped_df_mpse |
Man page
|
| mp_balance_clade,grouped_df_mpse-method |
Man page
|
| mp_balance_clade,tbl_mpse |
Man page
|
| mp_balance_clade,tbl_mpse-method |
Man page
|
| mp_cal_abundance |
Man page
|
| mp_cal_abundance,MPSE |
Man page
|
| mp_cal_abundance,MPSE-method |
Man page
|
| mp_cal_abundance,grouped_df_mpse |
Man page
|
| mp_cal_abundance,grouped_df_mpse-method |
Man page
|
| mp_cal_abundance,tbl_mpse |
Man page
|
| mp_cal_abundance,tbl_mpse-method |
Man page
|
| mp_cal_alpha |
Man page
|
| mp_cal_alpha,MPSE |
Man page
|
| mp_cal_alpha,MPSE-method |
Man page
|
| mp_cal_alpha,grouped_df_mpse |
Man page
|
| mp_cal_alpha,grouped_df_mpse-method |
Man page
|
| mp_cal_alpha,tbl_mpse |
Man page
|
| mp_cal_alpha,tbl_mpse-method |
Man page
|
| mp_cal_cca |
Man page
|
| mp_cal_cca,MPSE |
Man page
|
| mp_cal_cca,MPSE-method |
Man page
|
| mp_cal_cca,grouped_df_mpse |
Man page
|
| mp_cal_cca,grouped_df_mpse-method |
Man page
|
| mp_cal_cca,tbl_mpse |
Man page
|
| mp_cal_cca,tbl_mpse-method |
Man page
|
| mp_cal_clust |
Man page
|
| mp_cal_clust,MPSE |
Man page
|
| mp_cal_clust,MPSE-method |
Man page
|
| mp_cal_clust,grouped_df_mpse |
Man page
|
| mp_cal_clust,grouped_df_mpse-method |
Man page
|
| mp_cal_clust,tbl_mpse |
Man page
|
| mp_cal_clust,tbl_mpse-method |
Man page
|
| mp_cal_dca |
Man page
|
| mp_cal_dca,MPSE |
Man page
|
| mp_cal_dca,MPSE-method |
Man page
|
| mp_cal_dca,grouped_df_mpse |
Man page
|
| mp_cal_dca,grouped_df_mpse-method |
Man page
|
| mp_cal_dca,tbl_mpse |
Man page
|
| mp_cal_dca,tbl_mpse-method |
Man page
|
| mp_cal_dist |
Man page
|
| mp_cal_dist,MPSE |
Man page
|
| mp_cal_dist,MPSE-method |
Man page
|
| mp_cal_dist,grouped_df_mpse |
Man page
|
| mp_cal_dist,grouped_df_mpse-method |
Man page
|
| mp_cal_dist,tbl_mpse |
Man page
|
| mp_cal_dist,tbl_mpse-method |
Man page
|
| mp_cal_divergence |
Man page
|
| mp_cal_divergence,MPSE |
Man page
|
| mp_cal_divergence,MPSE-method |
Man page
|
| mp_cal_divergence,grouped_df_mpse |
Man page
|
| mp_cal_divergence,grouped_df_mpse-method |
Man page
|
| mp_cal_divergence,tbl_mpse |
Man page
|
| mp_cal_divergence,tbl_mpse-method |
Man page
|
| mp_cal_nmds |
Man page
|
| mp_cal_nmds,MPSE |
Man page
|
| mp_cal_nmds,MPSE-method |
Man page
|
| mp_cal_nmds,grouped_df_mpse |
Man page
|
| mp_cal_nmds,grouped_df_mpse-method |
Man page
|
| mp_cal_nmds,tbl_mpse |
Man page
|
| mp_cal_nmds,tbl_mpse-method |
Man page
|
| mp_cal_pca |
Man page
|
| mp_cal_pca,MPSE |
Man page
|
| mp_cal_pca,MPSE-method |
Man page
|
| mp_cal_pca,grouped_df_mpse |
Man page
|
| mp_cal_pca,grouped_df_mpse-method |
Man page
|
| mp_cal_pca,tbl_mpse |
Man page
|
| mp_cal_pca,tbl_mpse-method |
Man page
|
| mp_cal_pcoa |
Man page
|
| mp_cal_pcoa,MPSE |
Man page
|
| mp_cal_pcoa,MPSE-method |
Man page
|
| mp_cal_pcoa,grouped_df_mpse |
Man page
|
| mp_cal_pcoa,grouped_df_mpse-method |
Man page
|
| mp_cal_pcoa,tbl_mpse |
Man page
|
| mp_cal_pcoa,tbl_mpse-method |
Man page
|
| mp_cal_pd_metric |
Man page
|
| mp_cal_pd_metric,MPSE |
Man page
|
| mp_cal_pd_metric,MPSE-method |
Man page
|
| mp_cal_pd_metric,grouped_df_mpse |
Man page
|
| mp_cal_pd_metric,grouped_df_mpse-method |
Man page
|
| mp_cal_pd_metric,tbl_mpse |
Man page
|
| mp_cal_pd_metric,tbl_mpse-method |
Man page
|
| mp_cal_rarecurve |
Man page
|
| mp_cal_rarecurve,MPSE |
Man page
|
| mp_cal_rarecurve,MPSE-method |
Man page
|
| mp_cal_rarecurve,grouped_df_mpse |
Man page
|
| mp_cal_rarecurve,grouped_df_mpse-method |
Man page
|
| mp_cal_rarecurve,tbl_mpse |
Man page
|
| mp_cal_rarecurve,tbl_mpse-method |
Man page
|
| mp_cal_rda |
Man page
|
| mp_cal_rda,MPSE |
Man page
|
| mp_cal_rda,MPSE-method |
Man page
|
| mp_cal_rda,grouped_df_mpse |
Man page
|
| mp_cal_rda,grouped_df_mpse-method |
Man page
|
| mp_cal_rda,tbl_mpse |
Man page
|
| mp_cal_rda,tbl_mpse-method |
Man page
|
| mp_cal_upset |
Man page
|
| mp_cal_upset,MPSE |
Man page
|
| mp_cal_upset,MPSE-method |
Man page
|
| mp_cal_upset,grouped_df_mpse |
Man page
|
| mp_cal_upset,grouped_df_mpse-method |
Man page
|
| mp_cal_upset,tbl_mpse |
Man page
|
| mp_cal_upset,tbl_mpse-method |
Man page
|
| mp_cal_venn |
Man page
|
| mp_cal_venn,MPSE |
Man page
|
| mp_cal_venn,MPSE-method |
Man page
|
| mp_cal_venn,grouped_df_mpse |
Man page
|
| mp_cal_venn,grouped_df_mpse-method |
Man page
|
| mp_cal_venn,tbl_mpse |
Man page
|
| mp_cal_venn,tbl_mpse-method |
Man page
|
| mp_decostand |
Man page
|
| mp_decostand,MPSE |
Man page
|
| mp_decostand,MPSE-method |
Man page
|
| mp_decostand,data.frame |
Man page
|
| mp_decostand,data.frame-method |
Man page
|
| mp_decostand,grouped_df_mpse |
Man page
|
| mp_decostand,grouped_df_mpse-method |
Man page
|
| mp_decostand,tbl_mpse |
Man page
|
| mp_decostand,tbl_mpse-method |
Man page
|
| mp_diff_analysis |
Man page
|
| mp_diff_analysis,MPSE |
Man page
|
| mp_diff_analysis,MPSE-method |
Man page
|
| mp_diff_analysis,grouped_df_mpse |
Man page
|
| mp_diff_analysis,grouped_df_mpse-method |
Man page
|
| mp_diff_analysis,tbl_mpse |
Man page
|
| mp_diff_analysis,tbl_mpse-method |
Man page
|
| mp_diff_clade |
Man page
|
| mp_diff_clade,MPSE |
Man page
|
| mp_diff_clade,MPSE-method |
Man page
|
| mp_diff_clade,grouped_df_mpse |
Man page
|
| mp_diff_clade,grouped_df_mpse-method |
Man page
|
| mp_diff_clade,tbl_mpse |
Man page
|
| mp_diff_clade,tbl_mpse-method |
Man page
|
| mp_dmn |
Man page
|
| mp_dmn,MPSE |
Man page
|
| mp_dmn,MPSE-method |
Man page
|
| mp_dmn,grouped_df_mpse |
Man page
|
| mp_dmn,grouped_df_mpse-method |
Man page
|
| mp_dmn,tbl_mpse |
Man page
|
| mp_dmn,tbl_mpse-method |
Man page
|
| mp_dmngroup |
Man page
|
| mp_dmngroup,MPSE |
Man page
|
| mp_dmngroup,MPSE-method |
Man page
|
| mp_dmngroup,grouped_df_mpse |
Man page
|
| mp_dmngroup,grouped_df_mpse-method |
Man page
|
| mp_dmngroup,tbl_mpse |
Man page
|
| mp_dmngroup,tbl_mpse-method |
Man page
|
| mp_envfit |
Man page
|
| mp_envfit,MPSE |
Man page
|
| mp_envfit,MPSE-method |
Man page
|
| mp_envfit,grouped_df_mpse |
Man page
|
| mp_envfit,grouped_df_mpse-method |
Man page
|
| mp_envfit,tbl_mpse |
Man page
|
| mp_envfit,tbl_mpse-method |
Man page
|
| mp_extract_abundance |
Man page
|
| mp_extract_abundance,MPSE |
Man page
|
| mp_extract_abundance,MPSE-method |
Man page
|
| mp_extract_abundance,grouped_df_mpse |
Man page
|
| mp_extract_abundance,grouped_df_mpse-method |
Man page
|
| mp_extract_abundance,tbl_mpse |
Man page
|
| mp_extract_abundance,tbl_mpse-method |
Man page
|
| mp_extract_assays |
Man page
|
| mp_extract_assays,MPSE |
Man page
|
| mp_extract_assays,MPSE-method |
Man page
|
| mp_extract_assays,grouped_df_mpse |
Man page
|
| mp_extract_assays,grouped_df_mpse-method |
Man page
|
| mp_extract_assays,tbl_mpse |
Man page
|
| mp_extract_assays,tbl_mpse-method |
Man page
|
| mp_extract_dist |
Man page
|
| mp_extract_dist,MPSE |
Man page
|
| mp_extract_dist,MPSE-method |
Man page
|
| mp_extract_dist,grouped_df_mpse |
Man page
|
| mp_extract_dist,grouped_df_mpse-method |
Man page
|
| mp_extract_dist,tbl_mpse |
Man page
|
| mp_extract_dist,tbl_mpse-method |
Man page
|
| mp_extract_feature |
Man page
|
| mp_extract_feature,MPSE |
Man page
|
| mp_extract_feature,MPSE-method |
Man page
|
| mp_extract_feature,grouped_df_mpse |
Man page
|
| mp_extract_feature,grouped_df_mpse-method |
Man page
|
| mp_extract_feature,tbl_mpse |
Man page
|
| mp_extract_feature,tbl_mpse-method |
Man page
|
| mp_extract_internal_attr |
Man page
|
| mp_extract_internal_attr,MPSE |
Man page
|
| mp_extract_internal_attr,MPSE-method |
Man page
|
| mp_extract_internal_attr,grouped_df_mpse |
Man page
|
| mp_extract_internal_attr,grouped_df_mpse-method |
Man page
|
| mp_extract_internal_attr,tbl_mpse |
Man page
|
| mp_extract_internal_attr,tbl_mpse-method |
Man page
|
| mp_extract_otutree |
Man page
Source code
|
| mp_extract_rarecurve |
Man page
|
| mp_extract_rarecurve,MPSE |
Man page
|
| mp_extract_rarecurve,MPSE-method |
Man page
|
| mp_extract_rarecurve,grouped_df_mpse |
Man page
|
| mp_extract_rarecurve,grouped_df_mpse-method |
Man page
|
| mp_extract_rarecurve,tbl_mpse |
Man page
|
| mp_extract_rarecurve,tbl_mpse-method |
Man page
|
| mp_extract_refseq |
Man page
|
| mp_extract_refseq,MPSE |
Man page
|
| mp_extract_refseq,MPSE-method |
Man page
|
| mp_extract_refseq,grouped_df_mpse |
Man page
|
| mp_extract_refseq,grouped_df_mpse-method |
Man page
|
| mp_extract_refseq,tbl_mpse |
Man page
|
| mp_extract_refseq,tbl_mpse-method |
Man page
|
| mp_extract_sample |
Man page
|
| mp_extract_sample,MPSE |
Man page
|
| mp_extract_sample,MPSE-method |
Man page
|
| mp_extract_sample,grouped_df_mpse |
Man page
|
| mp_extract_sample,grouped_df_mpse-method |
Man page
|
| mp_extract_sample,tbl_mpse |
Man page
|
| mp_extract_sample,tbl_mpse-method |
Man page
|
| mp_extract_taxatree |
Man page
Source code
|
| mp_extract_taxonomy |
Man page
|
| mp_extract_taxonomy,MPSE |
Man page
|
| mp_extract_taxonomy,MPSE-method |
Man page
|
| mp_extract_taxonomy,grouped_df_mpse |
Man page
|
| mp_extract_taxonomy,grouped_df_mpse-method |
Man page
|
| mp_extract_taxonomy,tbl_mpse |
Man page
|
| mp_extract_taxonomy,tbl_mpse-method |
Man page
|
| mp_extract_tree |
Man page
|
| mp_extract_tree,MPSE |
Man page
|
| mp_extract_tree,MPSE-method |
Man page
|
| mp_extract_tree,grouped_df_mpse |
Man page
|
| mp_extract_tree,grouped_df_mpse-method |
Man page
|
| mp_extract_tree,tbl_mpse |
Man page
|
| mp_extract_tree,tbl_mpse-method |
Man page
|
| mp_filter_taxa |
Man page
|
| mp_filter_taxa,MPSE |
Man page
|
| mp_filter_taxa,MPSE-method |
Man page
|
| mp_filter_taxa,grouped_df_mpse |
Man page
|
| mp_filter_taxa,grouped_df_mpse-method |
Man page
|
| mp_filter_taxa,tbl_mpse |
Man page
|
| mp_filter_taxa,tbl_mpse-method |
Man page
|
| mp_fortify |
Man page
Source code
|
| mp_fortify.anosim |
Source code
|
| mp_fortify.anova.cca |
Source code
|
| mp_fortify.envfit |
Source code
|
| mp_fortify.mantel |
Source code
|
| mp_fortify.mantel.partial |
Source code
|
| mp_fortify.mrpp |
Source code
|
| mp_import_biom |
Man page
Source code
|
| mp_import_dada2 |
Man page
Source code
|
| mp_import_humann_regroup |
Man page
|
| mp_import_metaphlan |
Man page
Source code
|
| mp_import_qiime |
Man page
Source code
|
| mp_import_qiime2 |
Man page
Source code
|
| mp_mantel |
Man page
|
| mp_mantel,MPSE |
Man page
|
| mp_mantel,MPSE-method |
Man page
|
| mp_mantel,grouped_df_mpse |
Man page
|
| mp_mantel,grouped_df_mpse-method |
Man page
|
| mp_mantel,tbl_mpse |
Man page
|
| mp_mantel,tbl_mpse-method |
Man page
|
| mp_mrpp |
Man page
|
| mp_mrpp,MPSE |
Man page
|
| mp_mrpp,MPSE-method |
Man page
|
| mp_mrpp,grouped_df_mpse |
Man page
|
| mp_mrpp,grouped_df_mpse-method |
Man page
|
| mp_mrpp,tbl_mpse |
Man page
|
| mp_mrpp,tbl_mpse-method |
Man page
|
| mp_plot_abundance |
Man page
|
| mp_plot_abundance,MPSE |
Man page
|
| mp_plot_abundance,MPSE-method |
Man page
|
| mp_plot_abundance,grouped_df_mpse |
Man page
|
| mp_plot_abundance,grouped_df_mpse-method |
Man page
|
| mp_plot_abundance,tbl_mpse |
Man page
|
| mp_plot_abundance,tbl_mpse-method |
Man page
|
| mp_plot_alpha |
Man page
|
| mp_plot_alpha,MPSE |
Man page
|
| mp_plot_alpha,MPSE-method |
Man page
|
| mp_plot_alpha,grouped_df_mpse |
Man page
|
| mp_plot_alpha,grouped_df_mpse-method |
Man page
|
| mp_plot_alpha,tbl_mpse |
Man page
|
| mp_plot_alpha,tbl_mpse-method |
Man page
|
| mp_plot_diff_boxplot |
Man page
|
| mp_plot_diff_boxplot,MPSE |
Man page
|
| mp_plot_diff_boxplot,MPSE-method |
Man page
|
| mp_plot_diff_boxplot,grouped_df_mpse |
Man page
|
| mp_plot_diff_boxplot,grouped_df_mpse-method |
Man page
|
| mp_plot_diff_boxplot,tbl_mpse |
Man page
|
| mp_plot_diff_boxplot,tbl_mpse-method |
Man page
|
| mp_plot_diff_cladogram |
Man page
|
| mp_plot_diff_manhattan |
Man page
|
| mp_plot_diff_manhattan,MPSE |
Man page
|
| mp_plot_diff_manhattan,MPSE-method |
Man page
|
| mp_plot_diff_manhattan,grouped_df_mpse |
Man page
|
| mp_plot_diff_manhattan,grouped_df_mpse-method |
Man page
|
| mp_plot_diff_manhattan,tbl_mpse |
Man page
|
| mp_plot_diff_manhattan,tbl_mpse-method |
Man page
|
| mp_plot_diff_res |
Man page
|
| mp_plot_diff_res,MPSE |
Man page
|
| mp_plot_diff_res,MPSE-method |
Man page
|
| mp_plot_diff_res,grouped_df_mpse |
Man page
|
| mp_plot_diff_res,grouped_df_mpse-method |
Man page
|
| mp_plot_diff_res,tbl_mpse |
Man page
|
| mp_plot_diff_res,tbl_mpse-method |
Man page
|
| mp_plot_dist |
Man page
|
| mp_plot_dist,MPSE |
Man page
|
| mp_plot_dist,MPSE-method |
Man page
|
| mp_plot_dist,grouped_df_mpse |
Man page
|
| mp_plot_dist,grouped_df_mpse-method |
Man page
|
| mp_plot_dist,tbl_mpse |
Man page
|
| mp_plot_dist,tbl_mpse-method |
Man page
|
| mp_plot_ord |
Man page
|
| mp_plot_ord,MPSE |
Man page
|
| mp_plot_ord,MPSE-method |
Man page
|
| mp_plot_ord,grouped_df_mpse |
Man page
|
| mp_plot_ord,grouped_df_mpse-method |
Man page
|
| mp_plot_ord,tbl_mpse |
Man page
|
| mp_plot_ord,tbl_mpse-method |
Man page
|
| mp_plot_rarecurve |
Man page
|
| mp_plot_rarecurve,MPSE |
Man page
|
| mp_plot_rarecurve,MPSE-method |
Man page
|
| mp_plot_rarecurve,grouped_df_mpse-method |
Man page
|
| mp_plot_rarecurve,grouped_tbl_mpse |
Man page
|
| mp_plot_rarecurve,tbl_mpse |
Man page
|
| mp_plot_rarecurve,tbl_mpse-method |
Man page
|
| mp_plot_upset |
Man page
|
| mp_plot_upset,MPSE |
Man page
|
| mp_plot_upset,MPSE-method |
Man page
|
| mp_plot_upset,grouped_df_mpse |
Man page
|
| mp_plot_upset,grouped_df_mpse-method |
Man page
|
| mp_plot_upset,tbl_mpse |
Man page
|
| mp_plot_upset,tbl_mpse-method |
Man page
|
| mp_plot_venn |
Man page
|
| mp_plot_venn,MPSE |
Man page
|
| mp_plot_venn,MPSE-method |
Man page
|
| mp_plot_venn,grouped_df_mpse |
Man page
|
| mp_plot_venn,grouped_df_mpse-method |
Man page
|
| mp_plot_venn,tbl_mpse |
Man page
|
| mp_plot_venn,tbl_mpse-method |
Man page
|
| mp_rrarefy |
Man page
|
| mp_rrarefy,MPSE |
Man page
|
| mp_rrarefy,MPSE-method |
Man page
|
| mp_rrarefy,grouped_df_mpse |
Man page
|
| mp_rrarefy,grouped_df_mpse-method |
Man page
|
| mp_rrarefy,tbl_mpse |
Man page
|
| mp_rrarefy,tbl_mpse-method |
Man page
|
| mp_select_as_tip |
Man page
|
| mp_select_as_tip,MPSE |
Man page
|
| mp_select_as_tip,MPSE-method |
Man page
|
| mp_select_as_tip,grouped_df_mpse |
Man page
|
| mp_select_as_tip,grouped_df_mpse-method |
Man page
|
| mp_select_as_tip,tbl_mpse |
Man page
|
| mp_select_as_tip,tbl_mpse-method |
Man page
|
| mp_stat_taxa |
Man page
|
| mp_stat_taxa,MPSE |
Man page
|
| mp_stat_taxa,MPSE-method |
Man page
|
| mp_stat_taxa,grouped_df_mpse |
Man page
|
| mp_stat_taxa,grouped_df_mpse-method |
Man page
|
| mp_stat_taxa,tbl_mpse |
Man page
|
| mp_stat_taxa,tbl_mpse-method |
Man page
|
| multi_compare |
Man page
Source code
|
| mutate |
Man page
|
| mutate.MPSE |
Source code
|
| mutate.grouped_df_mpse |
Source code
|
| mutate.tbl_mpse |
Source code
|
| nest |
Man page
|
| nest.grouped_df_mpse |
Source code
|
| nest.tbl_mpse |
Source code
|
| nest_internal |
Source code
|
| newtaxname |
Source code
|
| ordplotClass-class |
Man page
|
| otutree |
Man page
|
| otutree,MPSE |
Man page
|
| otutree,MPSE-method |
Man page
|
| otutree,group_df_mpse |
Man page
|
| otutree,tbl_mpse |
Man page
|
| otutree,tbl_mpse-method |
Man page
|
| otutree<- |
Man page
|
| otutree<-,MPSE |
Man page
|
| otutree<-,MPSE,NULL-method |
Man page
|
| otutree<-,MPSE,phylo-method |
Man page
|
| otutree<-,MPSE,treedata-method |
Man page
|
| otutree<-,grouped_df_mpse |
Man page
|
| otutree<-,grouped_df_mpse,NULL-method |
Man page
|
| otutree<-,grouped_df_mpse,treedata-method |
Man page
|
| otutree<-,tbl_mpse |
Man page
|
| otutree<-,tbl_mpse,NULL-method |
Man page
|
| otutree<-,tbl_mpse,treedata-method |
Man page
|
| pcasample-class |
Man page
|
| pcoa-class |
Man page
|
| plotdiffbox |
Source code
|
| prcomp-class |
Man page
|
| print |
Man page
|
| print.MPSE |
Man page
Source code
|
| print.alphasample |
Source code
|
| print.grouped_df_mpse |
Man page
|
| print.rarecurve |
Man page
|
| print.tbl_mpse |
Man page
|
| print1.MPSE |
Source code
|
| print2.MPSE |
Source code
|
| pull |
Man page
|
| read_qiime_otu |
Source code
|
| read_qza |
Man page
|
| reexports |
Man page
|
| refsequence |
Man page
|
| refsequence,MPSE |
Man page
|
| refsequence,MPSE-method |
Man page
|
| refsequence<- |
Man page
|
| refsequence<-,MPSE |
Man page
|
| refsequence<-,MPSE,NULL-method |
Man page
|
| refsequence<-,MPSE,XStringSet-method |
Man page
|
| remove_MP_internal_res |
Source code
|
| remove_constant |
Source code
|
| remove_missing |
Man page
|
| remove_unclassfied |
Source code
|
| rename |
Man page
|
| rename.MPSE |
Source code
|
| rename.grouped_df_mpse |
Source code
|
| rename.tbl_mpse |
Source code
|
| repduplicatedtaxcheck |
Source code
|
| rfimportance |
Source code
|
| rowData |
Man page
|
| rownames<-,MPSE |
Man page
|
| rownames<-,MPSE-method |
Man page
|
| samplealpha |
Source code
|
| scale_fill_diff_cladogram |
Man page
|
| seedind |
Source code
|
| select |
Man page
|
| select.MPSE |
Source code
|
| select.alphasample |
Source code
|
| select.diffAnalysisClass |
Source code
|
| select.grouped_df_mpse |
Source code
|
| select.tbl_mpse |
Source code
|
| select_true_nm |
Source code
|
| set_diff_boxplot_color |
Man page
|
| set_factormap |
Source code
|
| set_newlevels |
Source code
|
| set_scale_theme |
Man page
|
| setfactorlevels |
Source code
|
| show,MPSE-method |
Man page
|
| show,alphasample-method |
Man page
|
| show,diffAnalysisClass-method |
Man page
|
| slice |
Man page
|
| split_data |
Man page
Source code
|
| split_str_to_list |
Man page
Source code
|
| stat_rare |
Source code
|
| stop_wrap |
Source code
|
| suppressmsg |
Source code
|
| tail.diffAnalysisClass |
Source code
|
| tax_table |
Man page
|
| tax_table,MPSE |
Man page
|
| tax_table,MPSE-method |
Man page
|
| tax_table,grouped_df_mpse |
Man page
|
| tax_table,grouped_df_mpse-method |
Man page
|
| tax_table,tbl_mpse |
Man page
|
| tax_table,tbl_mpse-method |
Man page
|
| taxatree |
Man page
|
| taxatree,MPSE |
Man page
|
| taxatree,MPSE-method |
Man page
|
| taxatree,grouped_df_mpse |
Man page
|
| taxatree,grouped_df_mpse-method |
Man page
|
| taxatree,tbl_mpse |
Man page
|
| taxatree,tbl_mpse-method |
Man page
|
| taxatree<- |
Man page
|
| taxatree<-,MPSE |
Man page
|
| taxatree<-,MPSE,NULL-method |
Man page
|
| taxatree<-,MPSE,treedata-method |
Man page
|
| taxatree<-,grouped_df_mpse |
Man page
|
| taxatree<-,grouped_df_mpse,NULL-method |
Man page
|
| taxatree<-,grouped_df_mpse,treedata-method |
Man page
|
| taxatree<-,tbl_mpse |
Man page
|
| taxatree<-,tbl_mpse,NULL-method |
Man page
|
| taxatree<-,tbl_mpse,treedata-method |
Man page
|
| taxonomy |
Man page
|
| taxonomy,MPSE |
Man page
|
| taxonomy,MPSE-method |
Man page
|
| taxonomy,grouped_df_mpse |
Man page
|
| taxonomy,grouped_df_mpse-method |
Man page
|
| taxonomy,tbl_mpse |
Man page
|
| taxonomy,tbl_mpse-method |
Man page
|
| taxonomy<- |
Man page
|
| taxonomy<-,MPSE |
Man page
|
| taxonomy<-,MPSE,NULL-method |
Man page
|
| taxonomy<-,MPSE,data.frame-method |
Man page
|
| taxonomy<-,MPSE,matrix-method |
Man page
|
| taxonomy<-,MPSE,taxonomyTable-method |
Man page
|
| tbl_mpse_return_message |
Source code
|
| td_filter |
Man page
|
| td_unnest |
Man page
|
| test_otu_data |
Man page
|
| theme_diffclade |
Source code
|
| theme_taxbar |
Man page
Source code
|
| tidydr |
Source code
|
| tidydr.cca |
Source code
|
| tidydr.decorana |
Source code
|
| tidydr.metaMDS |
Source code
|
| tidydr.pcoa |
Source code
|
| tidydr.prcomp |
Source code
|
| transformdf |
Source code
|
| treeskeleton |
Source code
|
| try_convert_taxa |
Source code
|
| ungroup |
Man page
|
| ungroup.grouped_df_mpse |
Source code
|
| unnest |
Man page
|
| unnest.tbl_mpse_nest |
Source code
|
| valid_rare |
Source code
|
| valid_rare.MPSE |
Source code
|
| valid_rare.grouped_df_mpse |
Source code
|
| valid_rare.tbl_mpse |
Source code
|
| varcorf |
Source code
|
| warning_wrap |
Source code
|
