Man pages for aertslab/SCENIC
SCENIC (Single Cell rEgulatory Network Inference and Clustering)
| add_cell_annotation | add_cell_annotation |
| calcRSS | RSS |
| defaultDbNames | Default databases by organism |
| dotHeatmap | dotHeatmap |
| export2loom | export2loom |
| exportsForArboreto | exportsForArboreto (alias: exportsForGRNBoost) |
| geneFiltering | geneFiltering |
| getDbAnnotations | getDbAnnotations |
| getDbTfs | getDbTfs |
| getRegulonName | getRegulonName |
| getTF | getTF |
| importArboreto | importArboreto |
| importAUCfromText | importAUCfromText (deprecated) |
| importModulesGmt | importModules (deprecated) |
| onlyNonDuplicatedExtended | onlyNonDuplicatedExtended |
| plotEmb_rgb | plotEmb_rgb |
| plotRSS | Plot RSS |
| plotTsne_AUCellApp | plotTsne_AUCellApp |
| plotTsne_AUCellHtml | plotTsne_AUCellHtml |
| plotTsne_compareSettings | plotTsne_compareSettings |
| regulon_plotExpression | regulon_plotExpression |
| regulonsToGeneLists | regulonsToGeneSet |
| runCorrelation | runCorrelation |
| runGenie3 | runGenie3 |
| runSCENIC_1_coexNetwork2modules | runSCENIC_1_coexNetwork2modules |
| runSCENIC_2_createRegulons | runSCENIC_2_createRegulons |
| runSCENIC_3_scoreCells | runSCENIC_3_scoreCells |
| runSCENIC_4_aucell_binarize | runSCENIC_4_aucell_binarize |
| ScenicOptions-class | Object to store SCENIC settings |
| selectRegulons | selectRegulons |
| tsneAUC | tsneAUC |
| viewMotifs | viewMotifs |
