importAUCfromText: importAUCfromText (deprecated)

In aertslab/SCENIC: SCENIC (Single Cell rEgulatory Network Inference and Clustering)

importAUCfromText (deprecated)

Description

Import AUCell matrix from text format, as generated by pySCENIC Deprecated: This function is no longer needed. The results can be loaded directly from the .loom file with get_regulons_AUC()

Usage

importAUCfromText(
  fileName,
  rows = "regulons",
  columns = "cells",
  transpose = TRUE,
  newNames = NULL
)

Arguments

fileName	File name of the AUC scores (transposed: gene-sets in rows, cells in columns)
rows	Type of data stored as rows (only for informative purposes) Default: "regulons"
columns	Type of data stored as columns (only for informative purposes) Default: "cells"
transpose	Whether to transpose the input matrix

See Also

pySCENIC (https://pyscenic.readthedocs.io)

Examples

regulonAUC <- importAUCfromText("aucMatrix.tsv")

aertslab/SCENIC documentation built on April 7, 2024, 10 a.m.