getRegulonName: getRegulonName

In aertslab/SCENIC: SCENIC (Single Cell rEgulatory Network Inference and Clustering)

getRegulonName

Description

Gets the regulon name for a given TF (only returns the 'extended' regulons if no directly-annotated regulon is available)

Usage

getRegulonName(TFs, allRegulonNames, sep = " ")

Arguments

TFs	Transcription factor name
allRegulonNames	List of regulon names (e.g. rownames(AUC...))
sep	Character used to separate the TF name, if different from space.

Details

...

Value

Named character vector

See Also

List of vignettes included in the package: vignette(package="SCENIC")

Examples

reguNames <- c("Dlx1 (103g)", "Dlx1_extended (190g)", "Olig2_extended (29g)", "Sox9 (17g)")
getRegulonName("Dlx1", reguNames)
getRegulonName("Olig2", reguNames)

aertslab/SCENIC documentation built on April 7, 2024, 10 a.m.