plotRSS: Plot RSS

In aertslab/SCENIC: SCENIC (Single Cell rEgulatory Network Inference and Clustering)

Plot RSS

Description

Plots an overview of the regulon specificity score

Usage

plotRSS(
  rss,
  labelsToDiscard = NULL,
  zThreshold = 1,
  cluster_columns = FALSE,
  order_rows = TRUE,
  thr = 0.01,
  varName = "cellType",
  col.low = "grey90",
  col.mid = "darkolivegreen3",
  col.high = "darkgreen",
  revCol = FALSE,
  verbose = TRUE
)

Arguments

rss	Output of calcRSS()
labelsToDiscard	Cell labels to ignore (i.e. do not plot). IMPORTANT: All cells in the analysis should be included when calculating the RSS.
zThreshold
cluster_columns
order_rows
thr
varName
col.low
col.mid
col.high
verbose
setName	Gene-set or cell type name to plot with plotRSS_oneSet()
n	Number of top regulons to label in plotRSS_oneSet(). Default: 5

Value

Matrix with the regulon specificity scores

Examples

# TODO

aertslab/SCENIC documentation built on April 7, 2024, 10 a.m.