plotTsne_compareSettings: plotTsne_compareSettings

In aertslab/SCENIC: SCENIC (Single Cell rEgulatory Network Inference and Clustering)

plotTsne_compareSettings

Description

Plots several t-SNEs coloured by cell properties (to compare different t-SNE settings)

Usage

plotTsne_compareSettings(fileNames, scenicOptions, varName = NULL, ...)

Arguments

fileNames	t-SNE files to plot
scenicOptions	imports cellInfo and colVars
varName	If a varName is given, it plots all the t-SNEs (not saved to file), colouring only for that variable. If null, it plots all the cellInfo colums for all the t-SNEs (each t-SNE in an individual file). To plot all cellInfo colums, but as individual plots, use TRUE.
...	Other arguments to pass to AUCell::plotTsne_cellProps

Value

Plots

Examples

fileNames <- paste0("int/", grep("tSNE_", list.files("int"), value=T))
par(mfrow=c(2,2))
plotTsne_compareSettings(fileNames, scenicOptions, varName="CellType")

aertslab/SCENIC documentation built on April 7, 2024, 10 a.m.