exportsForArboreto | R Documentation |
Exports the TF list and expression matrix to text format to run GRNBoost (https://arboreto.readthedocs.io). Note that it is also possible to run the full pipeline of SCENIC in python. See https://pyscenic.readthedocs.io
exportsForArboreto(exprMat, scenicOptions, dir = "int")
exprMat |
Expression matrix |
scenicOptions |
Fields used: getDatasetInfo(scenicOptions, "org"), to select the annotation database. |
dir |
Output folder (by default 'int' in current working directory) |
Writes the output as text files.
exportsForArboreto(exprMat, scenicOptions)
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