plotTsne_AUCellHtml: plotTsne_AUCellHtml

In aertslab/SCENIC: SCENIC (Single Cell rEgulatory Network Inference and Clustering)

plotTsne_AUCellHtml

Description

Wrapper for the 'AUCell_plotTSNE' function: plots the regulon activities on the t-SNE.

Usage

plotTsne_AUCellHtml(scenicOptions, exprMat, fileName, tSNE = NULL)

Arguments

scenicOptions	Fields used: aucell_regulonAUC, aucell_thresholds (int), and if tSNE=NULL the default tSNE.
exprMat	Expression matrix (if NULL, TF expression will not be plotted)
fileName	Location for the plots.
tSNE	If null, it plots the default t-SNE.

Value

NULL. The plots are saved as HTML with the name stored in fileName. If you are using RStudio, you might need to download the .html file and plots folder to view locally.

Examples

plotTsne_AUCellHtml(scenicOptions, exprMat, fileName)

aertslab/SCENIC documentation built on April 7, 2024, 10 a.m.