API for aertslab/SCENIC
SCENIC (Single Cell rEgulatory Network Inference and Clustering)

Global functions
ScenicOptions Man page
ScenicOptions-class Man page
closeDevHeatmap Source code
dbVersion Man page Source code
defaultDbNames Man page
export2scope Man page Source code
exportsForGRNBoost Man page Source code
geneFiltering Man page Source code
getDatabases Man page
getDatabases,ScenicOptions-method Man page
getDatasetInfo Man page
getDatasetInfo,ScenicOptions-method Man page
getDbAnnotations Man page Source code
getDbTfs Man page Source code
getIntName Man page
getIntName,ScenicOptions-method Man page
getOutName Man page
getOutName,ScenicOptions-method Man page
getRegulonName Man page Source code
getSettings Man page
getSettings,ScenicOptions-method Man page
getTF Man page Source code
importGRNBoostResults Man page Source code
initializeScenic Man page Source code
loadFile Man page
loadFile,ScenicOptions-method Man page
loadInt Man page Man page
loadInt,ScenicOptions-method Man page
onlyNonDuplicatedExtended Man page Source code
openDev Source code
openDevHeatmap Source code
plotTsne_AUCellApp Man page Source code
plotTsne_AUCellHtml Man page Source code
plotTsne_compareSettings Man page Source code
plotTsne_rgb Man page Source code
regulonSelections Source code
regulon_plotExpression Man page Source code
runGenie3 Man page Source code
runSCENIC_1_coexNetwork2modules Man page Source code
runSCENIC_2_createRegulons Man page Source code
runSCENIC_3_scoreCells Man page Source code
runSCENIC_4_aucell_binarize Man page Source code
show Man page
show,ScenicOptions-method Man page
tsneAUC Man page Source code
tsneFileName Source code
aertslab/SCENIC documentation built on Oct. 24, 2018, 6:10 p.m.