API for aertslab/SCENIC
SCENIC (Single Cell rEgulatory Network Inference and Clustering)

Global functions
ScenicOptions Man page
ScenicOptions-class Man page
closeDevHeatmap Source code
defaultDbNames Man page
defaultTsneFileName Source code
exportsForGRNBoost Man page Source code
getDatabases Man page
getDatabases,ScenicOptions-method Man page
getDatasetInfo Man page
getDatasetInfo,ScenicOptions-method Man page
getDbAnnotations Source code
getDbTfs Man page Source code
getDbVersion Source code
getIntName Man page
getIntName,ScenicOptions-method Man page
getOutName Man page
getOutName,ScenicOptions-method Man page
getRegulonName Man page Source code
getSettings Man page
getSettings,ScenicOptions-method Man page
getTF Man page Source code
importGRNBoostResults Man page Source code
initializeScenic Source code
loadFile Man page
loadFile,ScenicOptions-method Man page
loadInt Man page Man page
loadInt,ScenicOptions-method Man page
onlyNonDuplicatedExtended Man page Source code
openDev Source code
openDevHeatmap Source code
plotTsne_AUCellApp Man page Source code
plotTsne_compareSettings Man page Source code
plotTsne_regulonActivityHTML Man page Source code
plotTsne_rgb Man page Source code
regulonSelections Source code
regulon_plotExpression Man page Source code
runGenie3 Man page Source code
runSCENIC_1_coexNetwork2modules Man page Source code
runSCENIC_2_createRegulons Man page Source code
runSCENIC_3_scoreCells Man page Source code
runSCENIC_4_aucell_binarize Man page Source code
show Man page
show,ScenicOptions-method Man page
tsneAUC Man page Source code
aertslab/SCENIC documentation built on June 5, 2018, 1:22 p.m.