API for andigoni/MeinteR
A framework to prioritize DNA methylation aberrations based on conformational and cis-regulatory element enrichment
| Global functions | |
|---|---|
| TF.class | Man page |
| bed2Seq | Man page Source code |
| cTF | Man page |
| cpgIslands | Man page |
| filterByCGI | Man page Source code |
| filterByProm | Man page Source code |
| findAltSplicing | Man page Source code |
| findConservedTFBS | Man page Source code |
| findPals | Man page Source code |
| findQuads | Man page Source code |
| findShapes | Man page Source code |
| findSpliceSites | Man page Source code |
| findTFBS | Man page Source code |
| groupGEO | Source code |
| importGEO | Man page Source code |
| importLimma | Man page Source code |
| is.defined | Source code |
| isEmptyDF | Man page Source code |
| loadAnnotationGEO | Source code |
| loadFile | Man page Source code |
| loadSeqGEO | Man page Source code |
| meinter | Man page Source code |
| mval2beta | Source code |
| nameStudy | Man page |
| plotBeta | Man page Source code |
| plotCpG | Man page Source code |
| plotTF | Man page Source code |
| probesChr | Source code |
| refFreq | Man page |
| reorderBed | Man page Source code |
| sample | Man page |
| scatterConsTF | Man page Source code |
| test.data | Man page |
| validateBed | Man page Source code |
| validateGEO | Source code |
